RNA id: TU480922


Basic Information

Item Value
RNA id TU480922
length 3473
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G424501
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61652932 ~ 61656404 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtatgagacatttctgggatcttttatttcagttcacgaaacatgggaccaacactttacatgttgtgtttatatttttgttcagtgtaatttgtGTCAATATGGACACATATATACAAATTAATTTCATGTTGTCAACCATAACTTGAAGTGCTCTATGTGTATGTCTTCATTACACTAATGATGCAGTTTTATCTTAATACCATCACAGTCCACTGCTTGAACCTGTCATTTTTGTCAGATGAATTAACAACCACTAGTAATGGCTGATTCTGTCCTGCATTCTGTCTTGCCTCCAGAGTGAGTGTGAAATATGTTGCCCTCTTGTGGACAAAATAGTTAACTTCAATGTACACACAAACTCACAATGAGAAACAAAATGGATACAAGGACATTTTACATTATACAATTTTGCAGACTTTTTAAACACAAAATGGATAAATGAAACAATAACACACCAAAAATCCAGTGCATACTACACAAACATCATTAAAAAAGAATAATCAAAAACACAAACTCACACAAGCAATAAAAAGTGTCTTGTTTTTTTCATAGACAAAAGTTAACTTTTGATAGGTGTCTGATTCTCAACATACCTTATTCCCATTGCCCCACTGACAATTAATCAAATGTTTCCCTTTCCACAGCAGCAGGGCTGGATTACCAAACGGGCACACAGGGGTTGGGGGTCACCTGGAGGtcgggtccccccccccccctttaaaaatgtaacattttcTCTTAGCCTCATGACAAAATGTAGAATTGTAATATAAGATTTAGTATTGGTCCtcatatcctcaaaaggtttttgctcggcctccgaccgcaaggcactacacagggtagtgtgtacggcccagtacatcactgggaccaagcttcctgccatccaggacctctataccacgtggtgcagaggaaggcccaaagaattgtcaaagactccagccaccctagtcatagactgttccctctgctaccgcatggcaagcggtaccggagcgccaagtctaggtccaagtggtaccggagcgccaagcctAGGTCCAAGTGGCTCCTAAatagcttttacccccaagccataagactcctgaacagctaatccaATGGCTGCCCAGTCTATttgcactgccccccccccccccccccccccccgaacgctgctgctactctctgttattatctatgcatagtcactttaataactctacctacatgcacatattacctcaattacctcgacaccggggTAAccatattacctcgacaccggggTAACtatattacctcgacaccggggTAAccatattacctcgacaccggggTAACtatattacctcgacaccggggTAAccatattacctcgacaccggggTAACtatattacctcgacaccggggTAACTATATTACCTCAACACCGGGGTAACTATACTACCtctattacctcgacaccggggTAACtatattacctcgacaccggggTAAccatattacctcgacaccggggTAACTATATTACATCGACACCGGGGTAACCGGTacccctgtatgtagctccactattgttatttactgctgctctttaatcatttgttattcttgtctcttacttttttttttatctcttacttaaaactgcattgttggttaagggcttgtaagtaagcatttcactgtaaggtctactacaccatttgatttgatttgatataaaactgcacatttttccaATACAAAATATGTTGAAAAGCAGGGTAACTGGAGGTCGGTTCCCCAGTGACCCCAAATGCGGTAGTCCAGCCCTGagctttttaatttatttaaacaaaaaaaaagctCAACTTTATAAAATGGTTATACTGAATATGGACCTTTGATCTTAAATTGATGTCATAATTTTTCATAATTAAGGCCAGTgtccaaaaataaataattaaactatGCAGGATATAGTGTAAAAACAAACAGCTTTGCTCAGTATTATTAAAAGCAACACTAAACCTTTGTAATGGAACCAATGATCAAAATCCCTGAGAGACTTAAAAATGCACAGATTTTCAATACAAAAATCCATAAGTGGagattacatttttgtttttctGTGATCAATTCCTATCCAGCCCAACTTCCCACTCACTATCACGAGGCCATGCCCATTGAGACCATGATAGATGAATAGAACCTTGCTGCTCCCTAATCGGTCTCCTGTGAGCTGACCACTTCATTGATTTTGGGCTGAAGGATAAACTAAGCATTAAAGTTATATATATGTACATTAAATGGGGACCTGAATGTGAAGCATTAATCTGAAACACTGTGCTCTAAGTTACATGGCTAAATGACTGATGCTCTcacccctgctctgctctgtgctgTAGCCCAAGCAGGAGGAGAGAACCACATTGATGTGTGGTTTGACACCCCTTTGAACCAACACGCAGACAAACCAACCAAACCCAACAACAACACACCCACGGTATCTCCTCACTGTATCAAAATCAGAGAGGCAGTGCCACATGTTCATTGCCTACAATGGAGAGTCCAGCCCAGCTCTAAGGGGGGTCTTTCTTTCCTCTGGGATGATGTGAACGAGTGAACCCatcacctctctctgtgtgttggaaACCATGTGGCAGGATTTTTGTGTGTGGTAGTCGCTGCCAGCTATCTCTGCCACCCATCGCTGATTTCTAATTGCCTCAGGGGCagccctcctttctcctctgcccCGTGCTGAGCCGGGTAGGGAACACCTCCTTTGGGGAAATCCTCTCTCTCATTGGCTGGGTAGGGCTCCTGGGGGGTGTGATGAGCGGAATTGGAGGTGCTCATTGGAGAGTGCTGCCTCAAGTGGCGCACGGGCGGAGAGGTCGGGGAGCAGATGTGCTCCGGGGAGCAGCGCTCCGATTTGATGCTGAGGttgagggaggggtgaggaggaggggtgggggttgAGGACTGAGAAGGAAAAGAGCACCCTCCACTGGACATCCTGGTACACAGCAAGCggacagagaaaagagaataGTATATGCATGCATGATATAGTATGAAATGAATCCTCACTTGCTATTTTTCCTATAGAGGCCACTAGTGGACACACAACACTATCAGGTCCATCACTGTGTGCGAACACTGAGTAATTGAGTAAGGTGTAtatgggacggcaggtagcctagtggttaaagcgtcgggccagtaactgaaaggttgctagattgaacccccgagctgacaaggtaaaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccatcattgaaaataagaatttgttcttaactgacttgcctcggtAAATAAAATATCAATGGTCTTACGCTGGGCTGAGGTGAGGTACATGCTGCTCCTGTGGTTGTGCTGTCTGCCATGGGTTCACAGTCCCACGCTGTAGACTCACAGCATGGGAGAAACCTGGGTGACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480921 lncRNA downstream 648 61652022 ~ 61652284 (-) True G424500
TU480917 lncRNA downstream 3281 61649448 ~ 61649651 (-) True G424497
TU480907 lncRNA downstream 15566 61637113 ~ 61637366 (-) True G424487
TU480903 lncRNA downstream 24434 61628276 ~ 61628498 (-) True G424483
TU480895 lncRNA downstream 34191 61618053 ~ 61618741 (-) True LOC110524247
TU480939 lncRNA upstream 24247 61680651 ~ 61680884 (-) True G424512
TU480941 lncRNA upstream 27499 61683903 ~ 61684158 (-) True G424514
TU480942 lncRNA upstream 28007 61684411 ~ 61684639 (-) True G424515
TU480973 lncRNA upstream 55036 61711440 ~ 61711921 (-) True G424535
TU481028 lncRNA upstream 181345 61837749 ~ 61844260 (-) True G424586
XM_021603720.2 mRNA downstream 30577 61617987 ~ 61622355 (-) False LOC110524247
XM_036978016.1 mRNA downstream 141854 61304113 ~ 61511078 (-) True LOC110522983
trnaa-agc-3 mRNA downstream 386163 61266697 ~ 61266769 (-) True trnaa-agc-3
XM_021603710.2 mRNA downstream 410926 61139319 ~ 61242006 (-) False LOC110524243
XM_021603723.2 mRNA upstream 3745 61660149 ~ 61679106 (-) True LOC110524249
XM_021603730.2 mRNA upstream 106714 61763118 ~ 61786354 (-) False LOC110524252
XM_021603729.2 mRNA upstream 106714 61763118 ~ 61786542 (-) True LOC110524252
XM_021601328.2 mRNA upstream 185157 61841561 ~ 61842727 (-) True tssk6
XM_021603741.2 mRNA upstream 377685 62034089 ~ 62037994 (-) False si:ch211-212d10.2
TU480919 other downstream 1157 61649967 ~ 61651775 (-) True G424499
TU480894 other downstream 35688 61616870 ~ 61617244 (-) True G424474
TU479791 other downstream 581789 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1551876 60100765 ~ 60101056 (-) True G422347
TU477230 other downstream 2514675 59132870 ~ 59138257 (-) True lsg1
TU480929 other upstream 2629 61659033 ~ 61659585 (-) True G424502
TU481096 other upstream 231794 61888198 ~ 61927422 (-) False G424649
TU481097 other upstream 231794 61888198 ~ 61913769 (-) True G424649
TU481131 other upstream 342122 61998526 ~ 62001309 (-) True G424678
TU482117 other upstream 1147534 62803938 ~ 62808122 (-) True LOC110524277

Expression Profile