RNA id: TU480270


Basic Information

Item Value
RNA id TU480270
length 2191
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G423907
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61690708 ~ 61772270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGGAATCCACCTGCAATCAGGCTATCCGTCGTGTTTTCGAATGAAGTACCTGCTCATTTGTTACAAGCGTTAACTCTGTGGTCGCATGAGAAAACACTATTCAACAGCACACGGTTGTGCGCGGTCTGAGGATGGATACGTAGCCACCGAGACCCACGATGCAGGACCTTGGACAGATATATCATCATCTCAAGCCAGAAAAACAAAAAAACGCAGAGAAATAATTTGAGTGAGAGAGATCAGTAGCTGTGTGGGCCTGGACAAGGAGAACAGgaggaggaggagaaacagagagaaaatagGAAGAGAACGAGAGGATAGGATTGATGCCTGTTTGGAAGCAGTGAATGATGAACCAGGGAGCAGGTGATCCCAGCTGTCGATGGCCATGGGCTCTCTGGCTCCTCTCTTCCCGTGGCCCTCTGCTCCGTGCCGGGTTCTCAGGGAGCCGGCTGGGGCCAGCCAGGCAGCGGCAGAGTGGGCAGGCGAGCCGAGGCAAGGGGAGGCGAGGCAGGCTCTCATCCCCGCTAGCAAGATGCTCCTCAGAAAAGCGGAGCAGCAAATCAATATGGAGGAGAGAGGCTAGCAGAGTTCGCCCATCACTGCCCCCGGCCCTAGAGCCCAGGGACCCAGCGCTGCCagctctcgctctcctcctcctctagtagCAGGACCAGAACCAGCCACTGTATGGAGCACATCAGTCAGATCCTAACCCTCAACCACCCGctttctctctatctgtgtgtgtgtaagcatgtctgtatgtgtggttCCGCCGTAGGGGCTTTCCTGGTCCAAGACCATTTGATAAAACTTTgccagcgagaaagagagagaataaaaaacGGACGTCAAAggtctttttatttattttttcgcTGATTACTCATTCTTACTCATTCCACCTGACTATTTGAGCAAGAGTTCTTATATTGAATTGAACAGGGCTCTCTCGTCAGTCCCCCTCCAAGCATGTACTGTACAGTCACCATGCTCTCCACATCTGATGAACCAGGATAAAAGGACAATTTGAACTTTTTTCTCTCGTCTGCAGATTCAGAGAAAATCTTTTTTTCGCCTCCAGTTTTCTTCCTCACCCCTCAGGTTACTATCAGAGGAGGTGGCAGAGGTTATTGATCTGTATGGAGATGGAAGAGGTGCTGGTTTTGATACAGTACAGTTCACTGTCTGATGGTTATATAGTAGTGCCTGATAACCCATTCACTGTACAGCTGAACTATATTCAGGAGTGAACGAGTCCTGAGTGAGAGATGAAAAGGACGGTGAGCATATAGTGCCTGAACAGTGGCCTGAACAGTGGGCCTGATCAGTGGCCTGAACAGTATCCACTATTTCATGTGACTTTTCTCCTCCATATTTGAACAATTCTCTCCCCACAAGGAGCTTTGAAAAGACCTTCTATACAAGAAGCCCTATCTTTAgatacatagaaatagaaaacatttgATTAAATAAGAATGACTTTAAGTGATTTTTTTTTCGTTGGAGAAGAAAGGGATTGAAAACTTCTGGGCTGGAGAGGACAAAGGGGACAGAGATAGTTTGGACCTGAAACAGGAACACCTTTACACAGAGAGATCTACAAACAACACAATGTTGCAGACTTCACTTGATGCTGAGGTTACTATGGAGATGCAGTGGAAGCATCACGCATCATGTCCCGTGCAGACcaaaccagacacacagagaattaaAGCCGTTCACTGTAATAAAGGTCAATAGAAATGCCCCACCACAGTCAAGAGGATTCAGTTCTCCAATCTACTGATTATCACCAAGTGTTTGTGTGGTCAGGTAAGTAGGAGTCTTAACAAGGGAAAGGTACATTTATAAGTGGTGGTTGAAAAGTAATAAATTTTTTTGAATAGTTTCATTAGGTCTTAATGAAAGATTTTGAAACCAATTTTAGGGGGATATTGGTTGAGATCCCAAGGGATCCTTTGCCCGTTTCTATTTCAGAGTAAAGCTTTTAAATGTAAAATCCTTGATTTGCTGAAGTCTTTGTATGTGTTTGCACTGCAGCTTCATTCTCTTACCTACAATTTTCATATCATTGATCGTAATAACTATTTTTTATGTAAAAAATTAAAGACTGCTGCATGTTTTCAGTGTCTtgtggtaaaaaaataaaaataaagtgaaCGTAATTGAAAAAAGAAAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480263 lncRNA upstream 11261 61685412 ~ 61685626 (+) True G423906
TU480258 lncRNA upstream 17034 61679621 ~ 61679853 (+) True G423901
TU480231 lncRNA upstream 40497 61655986 ~ 61656390 (+) True G423874
TU480238 lncRNA upstream 51906 61644672 ~ 61644981 (+) True G423881
TU480232 lncRNA upstream 58345 61638322 ~ 61638542 (+) True G423875
TU480310 lncRNA downstream 19473 61763326 ~ 61765950 (+) True G423945
TU480386 lncRNA downstream 142700 61886553 ~ 61960274 (+) False G424016
TU480387 lncRNA downstream 142700 61886553 ~ 61913740 (+) False G424016
TU480388 lncRNA downstream 142700 61886553 ~ 61927236 (+) False G424016
TU480389 lncRNA downstream 143117 61886970 ~ 61929755 (+) True G424017
XR_005051827.1 mRNA upstream 41692 61637104 ~ 61655195 (+) True LOC110524248
XM_021603721.2 mRNA upstream 41779 61637104 ~ 61655108 (+) False LOC110524248
XM_021603722.2 mRNA upstream 41779 61637104 ~ 61655108 (+) False LOC110524248
XM_021603719.2 mRNA upstream 97555 61590603 ~ 61599332 (+) True nr2c2ap
XM_036978014.1 mRNA upstream 411221 61267215 ~ 61285666 (+) True hapln4
XM_021603725.2 mRNA downstream 42594 61786447 ~ 61793643 (+) False LOC110524251
XM_021603726.2 mRNA downstream 42594 61786447 ~ 61793643 (+) False LOC110524251
XM_021603727.2 mRNA downstream 42594 61786447 ~ 61793643 (+) False LOC110524251
XM_021603728.2 mRNA downstream 42594 61786447 ~ 61793643 (+) True LOC110524251
XM_021603732.2 mRNA downstream 65029 61808882 ~ 61840823 (+) False gatad2ab
TU478964 other upstream 1000982 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 2752670 58942728 ~ 58944217 (+) True G420634
TU476101 other upstream 3280111 58413123 ~ 58416776 (+) False G420117
TU475377 other upstream 3797239 57884380 ~ 57899648 (+) True G419452
TU475029 other upstream 4329550 57365364 ~ 57367337 (+) True LOC110524119
TU480458 other downstream 361670 62105523 ~ 62105872 (+) True G424079
TU480579 other downstream 539299 62283152 ~ 62306937 (+) False LOC110524265
TU481721 other downstream 1301237 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 1932561 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 2433175 64177028 ~ 64179386 (+) False sac3d1

Expression Profile