RNA id: TU481096


Basic Information

Item Value
RNA id TU481096
length 1351
RNA type TUCP
GC content 0.53
exon number 3
gene id G424649
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61888198 ~ 61927422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcgctcagactgttctctctctcgctcagactgttctctctctcgctcagactgttctctctctctctctcgctcagactgttctctctctctctctcgctcagactgttctctctctctctctcgctcagactgttctctctctctctcgctcatgactgttctctctctctcgctcagactgttctctccctctctcgctcagactgttctctctctctctcgctcagactgttctctctctcgctcagactgttctctctctctctctcgcgctcactgttctctctctctcgctcagactgttctctctctctcgctcagactgttctctctctcactcagactgttctctctctctctcgctcagactgttctctctctctcgctcagactgttctctcgctctcgctcagactgttctctctctcgctcagactgttctctctctctctctctctcgctcagactgttctctctctctcgctcagactgttctctctctctcttgctcagactgttctctctcgctcagactgttctctctctctctcgctcagactgttctctctctctctcgctcagactgttctctctctctctcgctcagacagctctctttctctctcgcccagactgctctctctctctcgctcagactgttctctctctctcgctcagactgttctctctcgctcagactgttctctcgctcagactgttctctctctctctcagactgttctctctctctctcgctcagactgttctctctctctctcgctcagactgttctctctctctcgctcagactgttctctctctctcgctcagactgttctctctctctcgctcagactgttctctctcgctcactgttctctcgctcagactgctctctttctctctcgcccagactgctctctttctctctcgctcagactgttctctctctctcgctctctctctcgctcagactgttctctctctctctctctcgctcagactgttctctctctctctctcgctcagactgttctctctctctcgctcagactgttctctctctctcttgctcagactgttctctctcgctcagactgttctctctctctctcgctcagactgttctctctctctctcgctcagactgttctctctctctcgctcagacagctctctttctctctcgcccagactgctctctctctctcgctcagactgttctctctctctcgctcagactgttctctctcgctcagactgttctctcgctcagactgttctctctcgctcagactgttctctctctctctcgctcagactgttctctctctctctcgctcagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481063 lncRNA downstream 9683 61853800 ~ 61878515 (-) True G424620
TU481028 lncRNA downstream 43938 61837749 ~ 61844260 (-) True G424586
TU480973 lncRNA downstream 176277 61711440 ~ 61711921 (-) True G424535
TU480942 lncRNA downstream 203559 61684411 ~ 61684639 (-) True G424515
TU480941 lncRNA downstream 204040 61683903 ~ 61684158 (-) True G424514
TU481115 lncRNA upstream 11131 61938553 ~ 61944254 (-) True G424664
TU481117 lncRNA upstream 40325 61967747 ~ 61973241 (-) True G424666
TU481132 lncRNA upstream 106043 62033465 ~ 62037930 (-) True si:ch211-212d10.2
TU481172 lncRNA upstream 119414 62046836 ~ 62047291 (-) True G424719
TU481174 lncRNA upstream 125489 62052911 ~ 62054066 (-) True G424721
XM_021601328.2 mRNA downstream 45471 61841561 ~ 61842727 (-) True tssk6
XM_021603729.2 mRNA downstream 101656 61763118 ~ 61786542 (-) True LOC110524252
XM_021603730.2 mRNA downstream 101844 61763118 ~ 61786354 (-) False LOC110524252
XM_021603723.2 mRNA downstream 209092 61660149 ~ 61679106 (-) True LOC110524249
XM_021603720.2 mRNA downstream 265843 61617987 ~ 61622355 (-) False LOC110524247
XM_021603741.2 mRNA upstream 106667 62034089 ~ 62037994 (-) False si:ch211-212d10.2
XM_021603746.2 mRNA upstream 149147 62076569 ~ 62083301 (-) False LOC110524260
XM_021603747.2 mRNA upstream 149147 62076569 ~ 62083301 (-) False LOC110524260
XR_002473566.2 mRNA upstream 149147 62076569 ~ 62083302 (-) False LOC110524260
XR_002473567.2 mRNA upstream 149147 62076569 ~ 62083302 (-) True LOC110524260
TU480929 other downstream 228613 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 236423 61649967 ~ 61651775 (-) True G424499
TU480894 other downstream 270954 61616870 ~ 61617244 (-) True G424474
TU479791 other downstream 817055 61058994 ~ 61071143 (-) True LOC110524239
TU478587 other downstream 1787142 60100765 ~ 60101056 (-) True G422347
TU481131 other upstream 71104 61998526 ~ 62001309 (-) True G424678
TU482117 other upstream 876516 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 922582 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 967237 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 1332226 63259648 ~ 63260469 (-) True LOC110524282

Expression Profile