RNA id: TU481117


Basic Information

Item Value
RNA id TU481117
length 468
lncRNA type intronic
GC content 0.52
exon number 2
gene id G424666
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61967747 ~ 61973241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctcgctcagactgttctctctctctctctctctcgctcagactgttctctctctctctctcgctcagactgttctctctctcgctcagactgtttctctctctctctctctctctctcgctcagactgtttctctctctctctctctcgctcagactgttctctctctctctctctcgctcagactgttctctctctcgctcagactgttctctctctcgctcagactgttctctctctctctcgctcagactgttctctctctctctcgctcagactgttctctctcgctcagactgttctctctctctctctcactcagactgttctctctctctcgctcagactgttctctctctctcgctcagactgttcactctctctcgctcagactgttctctctctcgctcagactgttctctctcgctctcgctcagactgttctctctcgctctcgc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481115 lncRNA downstream 23493 61938553 ~ 61944254 (-) True G424664
TU481100 lncRNA downstream 34012 61896476 ~ 61933735 (-) True G424650
TU481095 lncRNA downstream 49541 61888198 ~ 61918206 (-) False G424649
TU481093 lncRNA downstream 52790 61888198 ~ 61914957 (-) False G424649
TU481132 lncRNA upstream 60224 62033465 ~ 62037930 (-) True si:ch211-212d10.2
TU481172 lncRNA upstream 73595 62046836 ~ 62047291 (-) True G424719
TU481174 lncRNA upstream 79670 62052911 ~ 62054066 (-) True G424721
TU481188 lncRNA upstream 124663 62097904 ~ 62098122 (-) True G424735
TU481204 lncRNA upstream 244270 62217511 ~ 62231286 (-) True midn
XM_021601328.2 mRNA downstream 125020 61841561 ~ 61842727 (-) True tssk6
XM_021603729.2 mRNA downstream 181205 61763118 ~ 61786542 (-) True LOC110524252
XM_021603730.2 mRNA downstream 181393 61763118 ~ 61786354 (-) False LOC110524252
XM_021603723.2 mRNA downstream 288641 61660149 ~ 61679106 (-) True LOC110524249
XM_021603720.2 mRNA downstream 345392 61617987 ~ 61622355 (-) False LOC110524247
XM_021603741.2 mRNA upstream 60848 62034089 ~ 62037994 (-) False si:ch211-212d10.2
XM_021603746.2 mRNA upstream 103328 62076569 ~ 62083301 (-) False LOC110524260
XM_021603747.2 mRNA upstream 103328 62076569 ~ 62083301 (-) False LOC110524260
XR_002473566.2 mRNA upstream 103328 62076569 ~ 62083302 (-) False LOC110524260
XR_002473567.2 mRNA upstream 103328 62076569 ~ 62083302 (-) True LOC110524260
TU481096 other downstream 40325 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 53978 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 308162 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 315972 61649967 ~ 61651775 (-) True G424499
TU480894 other downstream 350503 61616870 ~ 61617244 (-) True G424474
TU481131 other upstream 25285 61998526 ~ 62001309 (-) True G424678
TU482117 other upstream 830697 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 876763 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 921418 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 1286407 63259648 ~ 63260469 (-) True LOC110524282

Expression Profile