RNA id: TU481188


Basic Information

Item Value
RNA id TU481188
length 219
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G424735
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62097904 ~ 62098122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGAGGGGCTGCAAAACTGTCAATCTGATCAGACAGGTCTGGTGAATAGGTGTTTTGAATGGCATGCTTATCTCTGGCATGTTTTATTCTGTTTGGTCCCTTGCCTTTGGTTTGTAGACTTAatgtagcctacatacagtagctTTGGCTTATTTCAGAGAACAAGTGAAAATGTAAAATCCCTATCTTCAGGAAACATGCCCCCCAGGTATACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481174 lncRNA downstream 43838 62052911 ~ 62054066 (-) True G424721
TU481172 lncRNA downstream 50613 62046836 ~ 62047291 (-) True G424719
TU481132 lncRNA downstream 59974 62033465 ~ 62037930 (-) True si:ch211-212d10.2
TU481117 lncRNA downstream 124663 61967747 ~ 61973241 (-) True G424666
TU481115 lncRNA downstream 153650 61938553 ~ 61944254 (-) True G424664
TU481204 lncRNA upstream 119389 62217511 ~ 62231286 (-) True midn
TU481260 lncRNA upstream 153949 62252071 ~ 62252271 (-) True G424804
TU481262 lncRNA upstream 156280 62254402 ~ 62255328 (-) True G424806
TU481263 lncRNA upstream 157397 62255519 ~ 62255787 (-) True G424807
TU481264 lncRNA upstream 160534 62258656 ~ 62258906 (-) True G424808
XR_002473564.2 mRNA downstream 5880 62084453 ~ 62092024 (-) False cirbpb
XR_002473565.2 mRNA downstream 5880 62084453 ~ 62092024 (-) False cirbpb
XM_021603743.2 mRNA downstream 5880 62087798 ~ 62092024 (-) True cirbpb
XM_021603744.2 mRNA downstream 5881 62086813 ~ 62092023 (-) False cirbpb
XM_036978019.1 mRNA downstream 6953 62087797 ~ 62090951 (-) False cirbpb
XM_021603748.2 mRNA upstream 119376 62217498 ~ 62249036 (-) False midn
XM_021603749.2 mRNA upstream 119376 62217498 ~ 62251746 (-) False midn
XR_002473568.2 mRNA upstream 179167 62277289 ~ 62281739 (-) False atp5f1d
XM_021603750.2 mRNA upstream 179168 62277290 ~ 62281739 (-) True atp5f1d
XM_021603756.2 mRNA upstream 230717 62328839 ~ 62441794 (-) True LOC110524266
TU481131 other downstream 96595 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 170482 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 184135 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 438319 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 446129 61649967 ~ 61651775 (-) True G424499
TU482117 other upstream 705816 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 751882 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 796537 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 1161526 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 1202802 63300924 ~ 63303394 (-) True G425810

Expression Profile