RNA id: TU481262


Basic Information

Item Value
RNA id TU481262
length 927
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G424806
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62254402 ~ 62255328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaaataatgcaaaaacaaagtgttggagaagaaagtaaaagtgcaatatgtgccatgtaaaaaagctaacgtttaagttccttgctcagaacatgagaacatatgaaagttggtggttccttttaacaggagtcttcaatattcccaggtaagaagttttaggttgtagttattataggaattttaggacaatttctctctatacgatttgtttTTCATATACCtttactattggatgttcttataggcactttagtattgccagtgtaacagtatagcttccgtccctctcctcgcccctacctgggctcgaaccaggaacacatcgacaacagccaccctcgaagcagcgttacccatcgctccacaaaagccgcggcccttgcaaagcaaggggaacaaccactccaagtctcagagcgagtgacgtttgaaatgctattagcgcgcaccccgctaactagctagccatttcacatccgttacaccagcctaatctcgggagttgataggcttgaagtcataaacagctcagtgcttgaagcacagcgacgagctgctggcaaaacgcacgaaagtgctgtttgaatgaatgcttacgagcctgctggtgcctaccatcgctcagtcagactgctctatcaaatcatagacttagttatagcATATTAACACAcataaatacgagccttaggtcattaatatggtcgaaggggcggcagggtagcctagtggttagagcgttggactagtaaccggaaggttgtgagttcaaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcccaggccgtcattgaaaataagaatttgttcttaactgacttgcctggttaaataaaggtaaaataaaaaataaaaaaataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481260 lncRNA downstream 2131 62252071 ~ 62252271 (-) True G424804
TU481204 lncRNA downstream 23116 62217511 ~ 62231286 (-) True midn
TU481188 lncRNA downstream 156280 62097904 ~ 62098122 (-) True G424735
TU481174 lncRNA downstream 200336 62052911 ~ 62054066 (-) True G424721
TU481172 lncRNA downstream 207111 62046836 ~ 62047291 (-) True G424719
TU481263 lncRNA upstream 191 62255519 ~ 62255787 (-) True G424807
TU481264 lncRNA upstream 3328 62258656 ~ 62258906 (-) True G424808
TU481265 lncRNA upstream 5655 62260983 ~ 62261300 (-) True G424809
TU481280 lncRNA upstream 26844 62282172 ~ 62282376 (-) True G424823
TU481292 lncRNA upstream 35009 62290337 ~ 62420531 (-) False G424830
XM_021603749.2 mRNA downstream 2656 62217498 ~ 62251746 (-) False midn
XM_021603748.2 mRNA downstream 5366 62217498 ~ 62249036 (-) False midn
XM_021603743.2 mRNA downstream 162378 62087798 ~ 62092024 (-) True cirbpb
XM_021603744.2 mRNA downstream 162379 62086813 ~ 62092023 (-) False cirbpb
XR_002473568.2 mRNA upstream 21961 62277289 ~ 62281739 (-) False atp5f1d
XM_021603750.2 mRNA upstream 21962 62277290 ~ 62281739 (-) True atp5f1d
XM_021603756.2 mRNA upstream 73511 62328839 ~ 62441794 (-) True LOC110524266
XM_036978023.1 mRNA upstream 330910 62586238 ~ 62680214 (-) False LOC110524270
XR_005051828.1 mRNA upstream 330910 62586238 ~ 62680215 (-) False LOC110524270
TU481131 other downstream 253093 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 326980 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 340633 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 594817 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 602627 61649967 ~ 61651775 (-) True G424499
TU482117 other upstream 548610 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 594676 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 639331 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 1004320 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 1045596 63300924 ~ 63303394 (-) True G425810

Expression Profile