RNA id: TU481297


Basic Information

Item Value
RNA id TU481297
length 1680
lncRNA type intronic
GC content 0.39
exon number 3
gene id G424830
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62290337 ~ 62431657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattatcacacacacacacacacacacacacacacaacttattatcacacacacacacacaacttattatcacacacacacacacccacaacttattatcacacacacacacacacacacacaacttattatcctacacacacacacacacaacttattatcacacacacacacacacacacacacacacaacttattatcacacacacacacacacacacacaacttattatcacacacacacacacacacacacaacttattatcacacacacacacacacacacacacaacttattatcacacacacacacacacacacacacaacttattatcacacacacacacacacacacacacaacttattatcacacacacacacacacacacacaacttattatcacacacacacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacaacttattatcctacacacacacacacacaacttattatcctacacacacacacacaacttattatcctacacacacacacacaacttattatcctacacacacacacacacacacacaacttattatcctacacacacacacacacacacacaacttattatcctacacacacacacacacacacaacttattatcctacacacacacaacttattatcccacacacacacacacacacacacaacttattatcccccacacacacacacacacacacacaacttattatcccacacacacacacacacacacacaacttattatcctacacacacacacacacacacacacaacttattatcctacacacacacacacacacacacaacttattatcctacacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacaacttattatcctacacacacacacacaacttattatcctacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacacaacttattatcctacacacacacacacacacacaacttattatcctacacacacacaacttattatcccacacacacacacacaacttattatcctacacacacacacacaacttattatcctacacacacacacaacttattatcctacacacacacaacttattatcctacacacacacacaacttattatcctacacacacacacacaacttattatcctacacacacacacacacacacacacacaacttattatcctacacacacacacacacacacaacttattatcctaccctacacacacaacttattatcctacacacacacacacacacacaacttattatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481337 lncRNA downstream 18327 62347724 ~ 62348198 (-) True G424868
TU481280 lncRNA downstream 84149 62282172 ~ 62282376 (-) True G424823
TU481265 lncRNA downstream 105225 62260983 ~ 62261300 (-) True G424809
TU481264 lncRNA downstream 107619 62258656 ~ 62258906 (-) True G424808
TU481263 lncRNA downstream 110738 62255519 ~ 62255787 (-) True G424807
TU481291 lncRNA upstream 87 62414831 ~ 62422251 (-) False G424830
TU481295 lncRNA upstream 87 62414831 ~ 62420531 (-) False G424830
TU481287 lncRNA upstream 11663 62426407 ~ 62431657 (-) False G424830
TU481289 lncRNA upstream 13052 62427796 ~ 62431657 (-) True G424830
TU481350 lncRNA upstream 62188 62476932 ~ 62485576 (-) True G424878
XR_002473568.2 mRNA downstream 84786 62277289 ~ 62281739 (-) False atp5f1d
XM_021603750.2 mRNA downstream 84786 62277290 ~ 62281739 (-) True atp5f1d
XM_021603749.2 mRNA downstream 114779 62217498 ~ 62251746 (-) False midn
XM_021603748.2 mRNA downstream 117489 62217498 ~ 62249036 (-) False midn
XM_021603743.2 mRNA downstream 274501 62087798 ~ 62092024 (-) True cirbpb
XM_036978023.1 mRNA upstream 171494 62586238 ~ 62680214 (-) False LOC110524270
XR_005051828.1 mRNA upstream 171494 62586238 ~ 62680215 (-) False LOC110524270
XM_036978024.1 mRNA upstream 175831 62590575 ~ 62680215 (-) True LOC110524270
XR_005051829.1 mRNA upstream 381873 62796617 ~ 62797240 (-) True LOC118964634
XM_036978027.1 mRNA upstream 389088 62803832 ~ 62805303 (-) False LOC110524277
TU481131 other downstream 365216 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 439103 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 452756 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 706940 61659033 ~ 61659585 (-) True G424502
TU480919 other downstream 714750 61649967 ~ 61651775 (-) True G424499
TU482117 other upstream 389194 62803938 ~ 62808122 (-) True LOC110524277
TU482168 other upstream 435260 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 479915 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 844904 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 886180 63300924 ~ 63303394 (-) True G425810

Expression Profile