RNA id: TU480582


Basic Information

Item Value
RNA id TU480582
length 2404
lncRNA type intronic
GC content 0.41
exon number 3
gene id G424193
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62416223 ~ 62433024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgataataagttgtgtgtgtgtgtgtgtgtgtgtgataataagttgtgtgtgtgtgtgtgtgtgataataagttgtgtgtgtgtgtgtgtgtgtgtgataataagttgtgtgtgtgtgtgtgtgtgtgtgataataagttgtgtgtgtgtgtgtgtgtgtgtgataataagttgtgtgtgtgtgtgtgtgtgtgataataagttgtgtgtgtgtgtgtgataataagttgtgtgtgtgtgtgtgtgtgtgtgtgataataaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggataataagttgtgtgtgtgtgtgtgtgtgtaggataataagttgtgtgtgtgtgtgtgtgtgtgtgtaggataataagttgtgtgtgtgtgtgtgtgtgtaggataataagttgtgtgtgtgtgtgtgtgtgtaggataataagttgtgtgtgtgtgtgtgtgtgtgtaggataataagttgtgtgtgtgtgtgtgtaggataataagttgtgtgtgtgtgtgtgtgtgtaggataataagttgtgtgtgtgtgtgtgtgtgtaggataataagttgtgtgtgtgtgtgtgtgtgtgtgtaggataataagttgtgtgtgtgtgtgtgtgtgtgtgtgtagggtaggataataagttgtgtgtgtgtgtgtgtgtagggtaggataataagttgtgtgtgtgtgtgtagggtaggataataagtgtgtgtgtagggtaggataataatgttgtgtgtgtgtgtagggtaggataacaatttgggtgtgtgtgtagggtaggataataagtatCAAGTCTCCATAAAGCAGCCTAGTGAAACTGCTTCACTTAACGAGAAGGGGGCCCCTAAGGAGCCGGGACATTAAAGTTGCATTGACTCCAGCATGGTATCGCTACCCATTGTAATTCTCCTTAATGTTAATATTTGCACAGAGCTGGGTAATTCATTTTAAAGACCCATCTGCCCTTTTGCCTGGTTAAATATTTATACTGTCATTTTTCTCCAGCTCCTATTTATGTCTCCTTATCCTTGGTTTATTTTGGCCACACATAGAAGGACCACATATGAAGGAGCGATTGATTACATACTCTTGAATAATTGCTATTAACATGCACTAAGGTAGGTTAGGCAACACGGGACGCACTACATCCTATCATGATGTGCAATCCATACATGGAAGTGAAAGAAACATGAAGTTAAAACACATTTGCTATCAAATTAATAAACTATGAataagccaagttaataaactgAATATTGAAAAAGCATATGCTAGAGGTATCTAAACCAACTCTCAAACATAGTTCATTTAATGtgatgcagtgccgtagaccgctgcgccactcgggaggccaacaTAGTTCATTACAAGCCTGTGTATGTATCTACACTACCTGTTTTCATCATTTTTCTCTCATTCCATTTTGCACCCAATACAGCGAGCCAAAATGAAATATGATTTTAAAGCAGTTTTGAGACGCCCACGGTGAATACAATACGTgattttccctccctccccgaGCTCTAGCATCACACAGATACGCTTCAGTCATCTGTCGCCATGGTAACTGCAGCCGGCATTCACTAGAGCATCAGCCCATGTAGTCAAGAGTCTTTAAGGgcttgggggaaaaaaaactggaaagttaggagagagagagggagcgatagaTTGGCTGGGCAGGGAAATGCTGCCTGTCTGACTGATGCCTTTTTAACTACAGCTCATCAGAAGCCCTGAGGTAGCACCAAATAAGGCAACGGATCTCACTACCACATGACTTCTTGGTGATGTTAGATAGAGGCATACAAAAGGTTGGAAGCATAATTGGTTGTAACTAAGGTTGAATGGCGGGAACCCGGTTATCGATATTTATTTCCCAAAACCACTCACTTCTCCCAGGATAAAATAGCTGCGAGAACCCGGTAAATTATTTATGAAAAGCATggcgtgaaatggaactgttaaatgatatgcaatgtctaaatCTAGCTTCGCTACGAACTCTGCATGATGAATCAAtcctcagggtggggacagacagcccatctcactATGGAGGCATATAGACCTATGATCTCATCACGGTAACctttttttcttttcttcctgtgacaggtaggcctacacTTGCTACAACATAGCCTATGTTACAATAATATAAAGACAGCATGCGTGCCTAATTTACCCATCCAGCTGGCGTATCACTAGATTATCTTTACTTTAAATCATTGCACGCGCAAGCACTCTCTCCATGTCCTTGCTCTCCATCAACTACATTCAAATTGCTTCCAAAACAGATCTAGATTTATGTATAGAtgtcctagcctacctctttcagATAATAAATTCAATGCAGTATCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480584 lncRNA upstream 57149 62322402 ~ 62369254 (+) True G424195
TU480574 lncRNA upstream 98636 62324732 ~ 62327767 (+) True LOC110524265
TU480535 lncRNA upstream 148236 62264597 ~ 62278167 (+) False G424154
TU480536 lncRNA upstream 148236 62277291 ~ 62278167 (+) True G424154
TU480571 lncRNA upstream 166919 62259271 ~ 62259484 (+) True G424184
TU480678 lncRNA downstream 96303 62529327 ~ 62606637 (+) True G424285
TU480683 lncRNA downstream 100489 62533513 ~ 62604086 (+) True G424288
TU481537 lncRNA downstream 292106 62725130 ~ 62785594 (+) True LOC110524272
TU481541 lncRNA downstream 300453 62733477 ~ 62772269 (+) True G425058
TU481568 lncRNA downstream 353935 62786959 ~ 62788098 (+) True G425085
XM_021603753.2 mRNA upstream 98631 62283054 ~ 62327772 (+) False LOC110524265
XM_021603754.2 mRNA upstream 98631 62283056 ~ 62327772 (+) False LOC110524265
XM_036978020.1 mRNA upstream 98631 62283056 ~ 62327772 (+) False LOC110524265
XM_021603742.2 mRNA upstream 353634 62068198 ~ 62072769 (+) True si:ch211-212d10.1
XM_021603740.2 mRNA upstream 396234 62006302 ~ 62030169 (+) True cilp2
NM_001160487.1 mRNA downstream 11651 62444675 ~ 62449760 (+) True LOC100301654
XM_021603757.2 mRNA downstream 35239 62468263 ~ 62474145 (+) True LOC110524267
XM_021603758.2 mRNA downstream 43850 62476874 ~ 62490792 (+) False bsg
XM_036978021.1 mRNA downstream 43850 62476874 ~ 62490792 (+) True bsg
XM_021603759.2 mRNA downstream 46761 62479785 ~ 62485347 (+) True LOC110524269
TU480579 other upstream 119466 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 320531 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 704379 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 1730498 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 3482186 58942728 ~ 58944217 (+) True G420634
TU481721 other downstream 612066 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 1243390 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 1744004 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 1744004 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 1744004 64177028 ~ 64179386 (+) True sac3d1

Expression Profile