RNA id: TU482165



Basic Information


Item Value
RNA id TU482165
length 350
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G425609
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62843132 ~ 62843481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcatacacagctcgagcaagacattcatcagcatttctctgactacattcctccattgagtcaaaaaaacttctgattccagctGTTGCTACgtataaggtgtctgattcatcattttcacatcgactagaagtagagggacttttgtctgaggttgcttgttgtgaacGCTGaaggaactttatgcacttggccagatgattctgcatctttgttgcattcttcacacatgatttggcacagtatttgcaaatgtacacagcttttccttctacattagctgcagtgaaaagtctccacacatcagatagtgcccgtggcattttcttGTAAAGATTAGAAAATATGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU482147 lncRNA downstream 27405 62815525 ~ 62815727 (-) True G425594
TU482146 lncRNA downstream 28105 62814812 ~ 62815027 (-) True G425593
TU482141 lncRNA downstream 32227 62810693 ~ 62810905 (-) True G425588
TU482140 lncRNA downstream 33800 62808559 ~ 62809332 (-) True G425587
TU482119 lncRNA downstream 46584 62795736 ~ 62796548 (-) True G425568
TU482166 lncRNA upstream 3228 62846709 ~ 62846927 (-) True G425610
TU482167 lncRNA upstream 5724 62849205 ~ 62849591 (-) True G425611
TU482183 lncRNA upstream 20253 62863734 ~ 62916723 (-) True G425621
TU482187 lncRNA upstream 74492 62917973 ~ 62918353 (-) True G425623
TU482256 lncRNA upstream 131534 62975015 ~ 62976051 (-) True G425689
XM_021603769.2 mRNA downstream 34956 62803832 ~ 62808176 (-) False LOC110524277
XM_036978027.1 mRNA downstream 37829 62803832 ~ 62805303 (-) False LOC110524277
XR_005051829.1 mRNA downstream 45892 62796617 ~ 62797240 (-) True LOC118964634
XR_005051828.1 mRNA downstream 162917 62586238 ~ 62680215 (-) False LOC110524270
XM_036978030.1 mRNA upstream 76097 62919578 ~ 63214799 (-) False LOC110524279
XM_036978031.1 mRNA upstream 76097 62919578 ~ 63214799 (-) False LOC110524279
XM_036978032.1 mRNA upstream 76097 62919578 ~ 63214799 (-) False LOC110524279
XM_036978033.1 mRNA upstream 76097 62919578 ~ 63214799 (-) False LOC110524279
XM_036978034.1 mRNA upstream 76097 62919578 ~ 63214799 (-) False LOC110524279
TU482117 other downstream 35010 62803938 ~ 62808122 (-) True LOC110524277
TU481131 other downstream 841823 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 915710 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 929363 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 1183547 61659033 ~ 61659585 (-) True G424502
TU482168 other upstream 6523 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 51178 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 416167 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 457443 63300924 ~ 63303394 (-) True G425810
TU483573 other upstream 1440487 64283968 ~ 64286359 (-) True LOC110522986

Expression Profile