RNA id: TU482166



Basic Information


Item Value
RNA id TU482166
length 219
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G425610
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62846709 ~ 62846927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTCAGGATGTTAGCAAGACTGTGGATGTCTCTGCTATCCCCACAGAATACCATGACCTCCTGGAAGTTTTCAGTAGGGCAGGTGCTACTTCCCTTCCCCCGCACCGTCcttatgattgtgccattgaTCTTCTCCCAGGCACTACACCACCTTGGGGTTgattgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU482165 lncRNA downstream 3228 62843132 ~ 62843481 (-) True G425609
TU482147 lncRNA downstream 30982 62815525 ~ 62815727 (-) True G425594
TU482146 lncRNA downstream 31682 62814812 ~ 62815027 (-) True G425593
TU482141 lncRNA downstream 35804 62810693 ~ 62810905 (-) True G425588
TU482140 lncRNA downstream 37377 62808559 ~ 62809332 (-) True G425587
TU482167 lncRNA upstream 2278 62849205 ~ 62849591 (-) True G425611
TU482183 lncRNA upstream 16807 62863734 ~ 62916723 (-) True G425621
TU482187 lncRNA upstream 71046 62917973 ~ 62918353 (-) True G425623
TU482256 lncRNA upstream 128088 62975015 ~ 62976051 (-) True G425689
TU482281 lncRNA upstream 180680 63027607 ~ 63030385 (-) True G425713
XM_021603769.2 mRNA downstream 38533 62803832 ~ 62808176 (-) False LOC110524277
XM_036978027.1 mRNA downstream 41406 62803832 ~ 62805303 (-) False LOC110524277
XR_005051829.1 mRNA downstream 49469 62796617 ~ 62797240 (-) True LOC118964634
XR_005051828.1 mRNA downstream 166494 62586238 ~ 62680215 (-) False LOC110524270
XM_036978030.1 mRNA upstream 72651 62919578 ~ 63214799 (-) False LOC110524279
XM_036978031.1 mRNA upstream 72651 62919578 ~ 63214799 (-) False LOC110524279
XM_036978032.1 mRNA upstream 72651 62919578 ~ 63214799 (-) False LOC110524279
XM_036978033.1 mRNA upstream 72651 62919578 ~ 63214799 (-) False LOC110524279
XM_036978034.1 mRNA upstream 72651 62919578 ~ 63214799 (-) False LOC110524279
TU482117 other downstream 38587 62803938 ~ 62808122 (-) True LOC110524277
TU481131 other downstream 845400 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 919287 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 932940 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 1187124 61659033 ~ 61659585 (-) True G424502
TU482168 other upstream 3077 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 47732 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 412721 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 453997 63300924 ~ 63303394 (-) True G425810
TU483573 other upstream 1437041 64283968 ~ 64286359 (-) True LOC110522986

Expression Profile