RNA id: TU482167



Basic Information


Item Value
RNA id TU482167
length 387
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G425611
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62849205 ~ 62849591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaaatacagcgtagacattattaatgttgtaaatgactattgtagctggaaacggcagattctttaatggaatatctatataggcgtacagaggcccattatcagcaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttatacttttagaaggctaattgatcattagaaaacccttttacaattatgttagcacagctgaaaactgttgtcctgattaaagaagcaataaaactggccttctttagactagttgagtatctggagcatcagcatttgttggttcgattacaggctcaaaatggccagaaacaaagaactttcatctgaaactcatcagtctactcttgttctgcaaaatgaaggctat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU482166 lncRNA downstream 2278 62846709 ~ 62846927 (-) True G425610
TU482165 lncRNA downstream 5724 62843132 ~ 62843481 (-) True G425609
TU482147 lncRNA downstream 33478 62815525 ~ 62815727 (-) True G425594
TU482146 lncRNA downstream 34178 62814812 ~ 62815027 (-) True G425593
TU482141 lncRNA downstream 38300 62810693 ~ 62810905 (-) True G425588
TU482183 lncRNA upstream 14143 62863734 ~ 62916723 (-) True G425621
TU482187 lncRNA upstream 68382 62917973 ~ 62918353 (-) True G425623
TU482256 lncRNA upstream 125424 62975015 ~ 62976051 (-) True G425689
TU482281 lncRNA upstream 178016 63027607 ~ 63030385 (-) True G425713
TU482188 lncRNA upstream 188233 63037824 ~ 63067194 (-) True G425624
XM_021603769.2 mRNA downstream 41029 62803832 ~ 62808176 (-) False LOC110524277
XM_036978027.1 mRNA downstream 43902 62803832 ~ 62805303 (-) False LOC110524277
XR_005051829.1 mRNA downstream 51965 62796617 ~ 62797240 (-) True LOC118964634
XR_005051828.1 mRNA downstream 168990 62586238 ~ 62680215 (-) False LOC110524270
XM_036978030.1 mRNA upstream 69987 62919578 ~ 63214799 (-) False LOC110524279
XM_036978031.1 mRNA upstream 69987 62919578 ~ 63214799 (-) False LOC110524279
XM_036978032.1 mRNA upstream 69987 62919578 ~ 63214799 (-) False LOC110524279
XM_036978033.1 mRNA upstream 69987 62919578 ~ 63214799 (-) False LOC110524279
XM_036978034.1 mRNA upstream 69987 62919578 ~ 63214799 (-) False LOC110524279
TU482117 other downstream 41083 62803938 ~ 62808122 (-) True LOC110524277
TU481131 other downstream 847896 61998526 ~ 62001309 (-) True G424678
TU481096 other downstream 921783 61888198 ~ 61927422 (-) False G424649
TU481097 other downstream 935436 61888198 ~ 61913769 (-) True G424649
TU480929 other downstream 1189620 61659033 ~ 61659585 (-) True G424502
TU482168 other upstream 413 62850004 ~ 62850247 (-) True G425612
TU482212 other upstream 45068 62894659 ~ 62900503 (-) True G425647
TU482441 other upstream 410057 63259648 ~ 63260469 (-) True LOC110524282
TU482381 other upstream 451333 63300924 ~ 63303394 (-) True G425810
TU483573 other upstream 1434377 64283968 ~ 64286359 (-) True LOC110522986

Expression Profile