RNA id: TU481706


Basic Information

Item Value
RNA id TU481706
length 2874
lncRNA type intronic
GC content 0.41
exon number 4
gene id G425216
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63022670 ~ 63032502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATAAACAGTATGGAATACCGAGGCTCTATAGTATAAACAGTATGGTATACCGAGGCTCTACAGTATAAATAGTATGGTATACCGAGGCTCCATAGTATAAACAGTATGGAATACCAAGGCTCTACAGTATAAACAGTATGGTATACCGAGGCTATACAGTATAAACAGTATGGTATACCGAGGCTCCATAGTATAAACAGTATGGAATACCAAGGCTCTAGAGTATAAACAGTATGGTATACCGAGGCTCTATAGTATAAACAGTATGGTATACTGAGGCTGTATAGTGTAGACTGTATGGTATACCAAGGCTCTATAGTATAAACAGTATGGTATACCGAGGCTCTATAGTATAAACAGGATGGTATACCGAGGATGTATAGTATAGACTGTATGGTATACCGAGGCTCTATAGTATAAACAGTATGGTATACCGAGGCTCTACAGTATAAACAGTATGGTATACCGAGGCTCCATAGTATAAACAGTATGGTATACCGAGGCTCTACAGTATAAGCAGTATGGTATACCGAGGCTgcatagtatagacagtatggtataCTGAGGCCTTACAGTATAAGCAGTATGGTATACCGAGGCTgcatagtatagacagtatggtataCCAAGGCTCTATAGTATAAACAGTATGGTATACCGAGGCTGTATGGTATAGACTGTATGGTATACCgaggctctatagtatagacagtatggtataccgaggctgtatagtatagacagtatggtatTCCGAGgatctatagtatagacagtagggtataccgaGGCTGCATAGTATAGACTGTATGGCATACCGAGGctgtatagtatagacagtatggtataccgaggatctatagtatagacagtagggtataccgatgctgaatagtatagacagtatggtataccgaggctctatagtatagacattAGGGTATACCGAGGCTGTATAGGatagacagtagggtataccgaggctgaatagtatagacagtatggtataccgaggctctatagaatagacagtagggtataccgaggctgtatagtacagacagtagggtataccgaggctctatagtatagacagtatggtataccgatgctgtatagtatagacagtatggtataCCAAGGCtgtgtagtatagacagtatggtataccgaggctctatagtatacacagtagggtataccgaggctctatagtatagacagtatggtataccgaggctctatagtatagacagtgggGTATACCGAGGCTgaatagtatagacagtatggtataccgaggctctatagtatagacagtagggtataccgaggctgtatagtatagacagtagggtataccgaggctgtatagtatagacagtatggtataCCGAGGCTGTATAGCATAAACTGTACGGTATACCGAGGCTCTATAGTATAAACAGTATGGTATACCGAGGCTCTACAGTATAAACAGTATGGTATACCGAGGCTCCATAGTATAAACAGTATGGTATACCGAGGCTCTACAGTATAAGCAGTATGGTATACCGAGGCTGTATGGTATAGACTGTATGGTATACCgaggctctatagtatagacagtagggtataccgaGGCTCTATAGTATAGCCAGTAAGGTATACCgaggctctatagtatagacagtatggtataccgaggctctatagtatagacagtagggtataccgaggctgaatagtacagacagtagggtataccgaggctgtatagtatagacagtatggtataCCAATGctgtatagtatagacagtatggtataCCAAGGCTgaatagtatagacagtatggtataccgaggctctatagaatagacagtatggtataccgaggccctatagtatagacagtagggtataccgaggctctatagtatagacagtatggtataccgaggctctatagtatagacagtagggtataccgaGGCTGAATACTATAGACAGTATGGTATACCgaggctctatagtatagacagtagggtatacaGAGGctgtatagtatagacagtagggtataccgaggctgtatagtatagacagtatggtataccgaggctctatagtatagacagtagggtataccgagtctctatagtatagacagtatggtataccgaggctgtatagtatagacagtatggtataCCCAGACtgaatagtatagacagtagggtataccgaGGCTCTATAGTATAGCCAGTACGGTATACCgaggctctatagtatagacagtagggtataccgaggctctatagtatagacagtagggtataccgaggctctatagtatagacagtagagtATACTGaagctctatagtatagacagtatggtacACCGAGGCtgaatagtatagacagtagggtataccgaggctctatagtatagacagtacggtataccgaggctctatagtatacacagtagggtataccgaggctctatagtatagacattatggtataccgaggctgaatagtacagacagtagggtataccgaggctctatagtatagacagtagggtataccgaggctgaatagtatagacagtatggtataccgaggctctatagtatagacagtagggtatacaGAGGCtgaatagtatagacagtagggtatactGAGGCtgaatagtatagacagtagggtataccgaggctgaatagtatagacagtagggtataccgaggctgaatagtatagacagtagggtataccgaGGCTGAATAGTATAGACAGCGTTACTCTCTGTGGTTCCGCTGTTATTCCTGTGGTGGCTAATCTATTGTTTTGCCTTTGGTCGCATATCAATTTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481651 lncRNA upstream 82511 62934257 ~ 62940159 (+) True G425165
TU481621 lncRNA upstream 122174 62895401 ~ 62900496 (+) False G425136
TU481622 lncRNA upstream 122174 62895401 ~ 62900496 (+) True G425136
TU481603 lncRNA upstream 168430 62854027 ~ 62854240 (+) True G425119
TU481581 lncRNA upstream 209731 62812738 ~ 62812939 (+) True G425097
TU481717 lncRNA downstream 2102 63034604 ~ 63039764 (+) True G425220
TU481710 lncRNA downstream 2311 63034813 ~ 63037380 (+) False G425218
TU481712 lncRNA downstream 2311 63034813 ~ 63071017 (+) False G425218
TU481715 lncRNA downstream 2311 63034813 ~ 63066308 (+) False G425218
TU481713 lncRNA downstream 23984 63056486 ~ 63071017 (+) False G425218
XM_021603770.2 mRNA upstream 130490 62885401 ~ 62892180 (+) True LOC110524278
XM_021603767.2 mRNA upstream 201467 62808921 ~ 62821203 (+) False LOC110524276
XM_021603768.2 mRNA upstream 201467 62810194 ~ 62821203 (+) True LOC110524276
XM_021603764.2 mRNA upstream 220330 62797704 ~ 62802340 (+) False LOC110524275
XM_021603788.2 mRNA downstream 264581 63297083 ~ 63303403 (+) False LOC110524284
XM_021603789.2 mRNA downstream 266228 63298730 ~ 63303244 (+) True LOC110524284
XR_005051965.1 mRNA downstream 267943 63300445 ~ 63300512 (+) True LOC118964772
XM_021603795.2 mRNA downstream 282034 63314536 ~ 63319938 (+) False LOC110524287
XM_021603793.2 mRNA downstream 282036 63314538 ~ 63319938 (+) False LOC110524287
TU480579 other upstream 715733 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 916798 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1300646 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2326765 60694257 ~ 60695905 (+) True LOC110524226
TU476694 other upstream 4078453 58942728 ~ 58944217 (+) True G420634
TU481721 other downstream 12588 63045090 ~ 63051530 (+) True G425224
TU482675 other downstream 643912 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 1144526 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 1144526 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 1144526 64177028 ~ 64179386 (+) True sac3d1

Expression Profile