RNA id: TU481711


Basic Information

Item Value
RNA id TU481711
length 2472
lncRNA type intronic
GC content 0.41
exon number 4
gene id G425218
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63034813 ~ 63071017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagaaattagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaaccgagagagacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacaaagagagaaagatagagagaaactgagagagaaaccgagagaaacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagaaactgacagaatagtgagagagaaacagagagggaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacagagagagaaacagagagaaacagagagggaaacagggagaaacagagagaaacgagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaaccgagagagacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacaaagagagaaagatagcgaGAAACTGAGAGCaaccgagagaaacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagataagcagagagagaaacagagagagaaacagagagagaaacagagagagaaacagggagaaacagagagaaacagagagaaaccgagagagacagagagagaaacagagagagaaacaaagagagaaagagagagagaaacagagagggaaacagaaactgacagaatagtgagagagaaacagagagggaaacagagagagaaacagagagaaacagagagagaaaccgagagaaacagagagagaaacagagagagaaacaaagagaaaaagatagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacacagaaagaaacagagagagaaacagggagaaacagagagaaacagagagagaaacaaagagagaaacagaaactgacagaatagtgagagagaaacacagagagacacagagaaaaaccgagagaaacagagagagaaacaaaaagagaaagatagagagaaacagagagagaaaccgagagaaacagagagagaaacagggagaaacagagagaaatgagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaaccgagagagacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacaaatagagaaagatagagagaaactgagagagaaaccgagagaaacagagagagaaactgagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacagagagaagcagagagaaacagacagagaaagagagaaacagagagaaacagagagagaaacagagagagaaacagagagaaacagagagaagcagagagaaaaacagagaaacagacagagaaagagagaaacagagagaaacagagagagaaacagagagaagcagagagaaacagagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacacagagagacacagagaaaaaccgagagaaacagagagagaaacaaaaagagaaagatagagagaaacagagagagaaaccgagagaaacagagagagaaacaaagagagaaagagagagagaaacagagagagaaacagaaactgacagaatagtgagagagaaacagagagagaaacagagagaagcagagagagaaacagagagagaaacagagagagaaacagagagagaaacagagagaaacagagagaaacagagagagaaacagggagaaacagagagaaacgagagagaaacagaaactgacagaatcgtgagagagaaacagagagaaacagagagaaacagggagaaacagagagaaacagagagaaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481715 lncRNA upstream 529 63034813 ~ 63066308 (+) False G425218
TU481717 lncRNA upstream 27073 63034604 ~ 63039764 (+) True G425220
TU481710 lncRNA upstream 29457 63034813 ~ 63037380 (+) False G425218
TU481706 lncRNA upstream 34335 63022670 ~ 63032502 (+) True G425216
TU481651 lncRNA upstream 126678 62934257 ~ 62940159 (+) True G425165
TU481760 lncRNA downstream 38046 63109063 ~ 63110144 (+) False G425259
TU481759 lncRNA downstream 38783 63109800 ~ 63119375 (+) True G425259
TU481761 lncRNA downstream 39805 63110822 ~ 63113852 (+) False G425260
TU481762 lncRNA downstream 41459 63112476 ~ 63113682 (+) True G425260
TU481870 lncRNA downstream 180486 63251503 ~ 63251829 (+) True G425354
XM_021603770.2 mRNA upstream 174657 62885401 ~ 62892180 (+) True LOC110524278
XM_021603767.2 mRNA upstream 245634 62808921 ~ 62821203 (+) False LOC110524276
XM_021603768.2 mRNA upstream 245634 62810194 ~ 62821203 (+) True LOC110524276
XM_021603764.2 mRNA upstream 264497 62797704 ~ 62802340 (+) False LOC110524275
XM_021603788.2 mRNA downstream 226066 63297083 ~ 63303403 (+) False LOC110524284
XM_021603789.2 mRNA downstream 227713 63298730 ~ 63303244 (+) True LOC110524284
XR_005051965.1 mRNA downstream 229428 63300445 ~ 63300512 (+) True LOC118964772
XM_021603795.2 mRNA downstream 243519 63314536 ~ 63319938 (+) False LOC110524287
XM_021603793.2 mRNA downstream 243521 63314538 ~ 63319938 (+) False LOC110524287
TU481721 other upstream 15307 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 759900 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 960965 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1344813 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2370932 60694257 ~ 60695905 (+) True LOC110524226
TU482675 other downstream 605397 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 1106011 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 1106011 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 1106011 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 1172585 64243602 ~ 64244529 (+) True LOC110522985

Expression Profile