RNA id: TU482381


Basic Information

Item Value
RNA id TU482381
length 1870
RNA type TUCP
GC content 0.52
exon number 5
gene id G425810
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63300924 ~ 63303394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccatttttaATATGGTTTACAATTCATAAATTCTTGACAAGGTCTTGACTTTTCTTTTGGCAAATGTTAGTGCTCATGGTGATCTGTACAGTCCTGTTCCTCAGTATTGGAAGGGGGGGAATGAGGCAGGGGAATGAGAGGGTAGCCTTTTACAATTTGTCCAGGTAGTTGTCCAATGCAGGAATGCCCTCCTTGAGCCCCTTACGTTTACGGGTGTCAGCCACAATCTGAGAGATTTTGGTGGTAGAGTCCTGTGGATCTCCCTGGAGGATCTGCCAGTGGTCAAACACACACTGGGGGAAGGCTTGGCCACCAGTGTTGGAACGCAGGTCAGCTGTGAACCGAAAGACTCGTTGACAGGCAGGTAAGCCTTGACGATGAACATGGGGGTCCCCATGACCTGGGACTCCTCGAACACGTGACCGCGCTTCCGGTTCAACACACCGTAGATGCCTCCTACCACCTGCTCAGGACACTGCAGGGAAAAACAAGGTTAACATTGAAAACTATGGTTAATGCCAACAGGTATGCATGCAAAAGCTGTGCAGTTAAAGGTTCTAGAATTGTAGCATTTTCTAGTCAACTTCCATTAGCCTCTAGTTGCAAGCTCATTTGTACATTCAGGTCTCAGATATTGTGGTTTATGGGTTTATCCATCACTTGTTCAGCGTGGTGCATGATTTCTCATCATAGACCTTTTCCTTATTGAAATTAAATATTCAACAGGCATTGTGAATTGTAAGCCTACCTGAATCTCCACCAGGTAGACAGGCTCCATGAGTCTTGGCTGGGCTGTAAGTTGGCAGGCATACAGCACTCTGCGGGCTGTGGGAATGATCTGACCACCACCACGGTGGATAGCATCTGTGTGGAGGGTCACGTCATGGACATCAAAGCGGACAGCACGCATGTTCTCTTCACACAGGGCACCTCCTTAACGGCCCATTGGAAGCCGGCCACCACGCTGTCCTTGATCTCGTTCAGGTACTGGACTCCCTTGGTCACGTCCATCAGCAGGTTGGGGCCAGTACCATCAGGGCCGAAGCACCAGATCTTACGGGCCTCAGACACATCCCACTCGTACTTGTCGGCCAGGAAACGGGCACGGATCTTCAGCTCTTGTCTGGCGCTGACGTCGCCCTTCTCGATGTCCTCAGCCAGGCCGTCAGGGAAGGGACGGGCCTTCATGTACAGACGGTTGTGTTTGTTTGGGGACTTGGATAGGCACATCTGGTCAGACTCCTCAGACACAGTCTCCCTGTAGGAAACCACCGGATCTGATtCTTCAGTGGAATGCAGGCATGGTCctcctccagatccttcaggcaGATCTCCAGATGCAGCTCGCCAGCTCCAGCGATGATGTGCTCTCCAGACTCCTCAATGATACACTGCACCATGGGGTCAGACTTGGCCAGACGCTTCAGGCCCTCCACCAGCTTGGGCAGATCAGCAGGGTTCTTGGCCTCGACAGCCACTCTCACCACAGGGCTGACGCTGAACTTCATCACCCTCATGTTATGGGCCTGCTCAAAGGTAGTGATGGTACCGGTCTTCACCAGGTACTGGTCCACTCCAACCAGCCCAACAATGTTCCCGCATGGCACGTCCTCGATAGGTTCAATGTAACGTCCCATCATCAGAATGGTCCTAATTTGGTTTGAGGTAGAGGTCCTCCTTCTTTCCAGGGGTGAAGTTTGGTCCCATAATGCGCACCTTCTGGCCAGAGGACACGCAGCCGGAGAAGACACGGCCAAAGGCATAGAAGCGACCCTTGTCGGTGGTGGGCACCATCTTGGAGATGTACATCATCAAAGGAGCCTTGGGGTCACAGTTCTTGATACCTAAGGTGAAACTGTTGGGTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482396 lncRNA downstream 10147 63290446 ~ 63290777 (-) True G425820
TU482465 lncRNA downstream 10912 63289718 ~ 63290012 (-) True G425881
TU482462 lncRNA downstream 13529 63287072 ~ 63287395 (-) True G425878
TU482453 lncRNA downstream 31106 63269501 ~ 63269818 (-) True G425870
TU482444 lncRNA downstream 41470 63257748 ~ 63259454 (-) False LOC110524282
TU482472 lncRNA upstream 19077 63322471 ~ 63322852 (-) False G425886
TU482470 lncRNA upstream 19169 63322563 ~ 63322852 (-) False G425886
TU482471 lncRNA upstream 19169 63322563 ~ 63323012 (-) True G425886
TU482478 lncRNA upstream 29664 63333058 ~ 63333575 (-) True G425892
TU482386 lncRNA upstream 106404 63409798 ~ 63417187 (-) False G425811
XM_021603787.2 mRNA downstream 18276 63274631 ~ 63282648 (-) True LOC110524283
XM_021603786.2 mRNA downstream 40443 63257597 ~ 63260481 (-) False LOC110524282
XM_036978029.1 mRNA downstream 86021 62919578 ~ 63214903 (-) True LOC110524279
XM_036978037.1 mRNA downstream 86022 62919578 ~ 63214902 (-) False LOC110524279
XM_036978038.1 mRNA downstream 86022 62919578 ~ 63214902 (-) False LOC110524279
XM_021603790.2 mRNA upstream 370 63303764 ~ 63314291 (-) True btbd2a
XM_036978050.1 mRNA upstream 77405 63380799 ~ 63399318 (-) False si:dkey-110c1.10
XM_036978049.1 mRNA upstream 77405 63380799 ~ 63402249 (-) True si:dkey-110c1.10
XM_021603816.2 mRNA upstream 99052 63402446 ~ 63409136 (-) False LOC110524293
XM_021603814.2 mRNA upstream 99052 63402446 ~ 63409138 (-) False LOC110524293
TU482441 other downstream 40455 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 400421 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 450677 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 492802 62803938 ~ 62808122 (-) True LOC110524277
TU481131 other downstream 1299615 61998526 ~ 62001309 (-) True G424678
TU483573 other upstream 980574 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 1263287 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 1398480 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 1422533 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1601651 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile