RNA id: TU481816


Basic Information

Item Value
RNA id TU481816
length 486
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G425308
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63321778 ~ 63322263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaccaccaccagatgGTGGTAAAGCTCTACTTACAAACGTTGTCAGTGGTTAGCTTGAAGGGTTCTCAGTTTCTTTACATTATACTAGATGTCTGAATTGACAGATTTATGTGGTTTAGATCCACTTTATTCGCTGGAGGCCTTTCCcagtgtatttttttttgttgctgtggTTAGACTTGATTAAGATCAAACCAACATGCCTCCTGAAATTATGCCTAGTAGCCCATAGGTCGGCgcacgattggcccagcgtcgtccgggtttgcccagagtagaccgtcattgtaaataagaatttgttctttactgacttgcctatttaaaaagaaagaaaaaaagttgCTGTTTCTGAAAGCTTTGGGATCAGAACAAGGATAGGCCGTTTAATTCTAGGCACAGAACATAACCGTCATTCAAGGTTCCGATGGCATGTAAACTACTGAATGAATTTATTCTATAAATCTATGGATTCCTAAATTATA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481875 lncRNA upstream 65022 63256536 ~ 63256756 (+) True G425359
TU481870 lncRNA upstream 69949 63251503 ~ 63251829 (+) True G425354
TU481759 lncRNA upstream 202403 63109800 ~ 63119375 (+) True G425259
TU481761 lncRNA upstream 207926 63110822 ~ 63113852 (+) False G425260
TU481762 lncRNA upstream 208096 63112476 ~ 63113682 (+) True G425260
TU481905 lncRNA downstream 54416 63376679 ~ 63378116 (+) True G425385
TU481939 lncRNA downstream 67787 63390050 ~ 63392234 (+) False G425415
TU481940 lncRNA downstream 67787 63390050 ~ 63390597 (+) True G425415
TU481956 lncRNA downstream 87550 63409813 ~ 63417222 (+) True G425431
TU481907 lncRNA downstream 108554 63430817 ~ 63431584 (+) True G425387
XM_021603795.2 mRNA upstream 1840 63314536 ~ 63319938 (+) False LOC110524287
XM_021603793.2 mRNA upstream 1840 63314538 ~ 63319938 (+) False LOC110524287
XM_021603792.2 mRNA upstream 1840 63314897 ~ 63319938 (+) False LOC110524287
XM_021603791.2 mRNA upstream 1840 63314898 ~ 63319938 (+) True LOC110524287
XM_021603788.2 mRNA upstream 18375 63297083 ~ 63303403 (+) False LOC110524284
XM_036978039.1 mRNA downstream 276 63322539 ~ 63376215 (+) False unc13a
XM_036978040.1 mRNA downstream 276 63322539 ~ 63376215 (+) False unc13a
XM_036978041.1 mRNA downstream 276 63322539 ~ 63376215 (+) False unc13a
XM_036978042.1 mRNA downstream 276 63322539 ~ 63376215 (+) False unc13a
XM_036978043.1 mRNA downstream 276 63322539 ~ 63376215 (+) False unc13a
TU481721 other upstream 270248 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 1014841 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 1215906 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1599754 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2625873 60694257 ~ 60695905 (+) True LOC110524226
TU482675 other downstream 354151 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 854765 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 854765 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 854765 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 921339 64243602 ~ 64244529 (+) True LOC110522985

Expression Profile