RNA id: TU482472


Basic Information

Item Value
RNA id TU482472
length 382
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G425886
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63322471 ~ 63323012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGCACAGCAATGACATCTCTTAGCTCTGGCTATGATCGCTCCCAGATGTCTTCCACCGGCACCGATATTTCAATTCGGAGTAATGTCCGTCTCTATAGCCTGTATAAATAGGTGGATGGAGTCAGCTCCGTTTCTACTAGAAACTATTATACGTCACTGTTTTGCGACAGTAAAAAAAATCTGATCTTTCGAGTCTTTCGTCGTGCGCTTTCCCTTTCGTGTATGGATCAATTTAGGGGGTTATATTTCAACCTCAGCTCTCCGCTCCCCGACGCACAGCCATCTTGTTCAGCACCACCACTGTAAGGACAGTTCCCGAGACTTACGTCACGGTAGTGATGACGGGATGACCCAAGGATGCTCGCAACACCTGACTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482396 lncRNA downstream 31694 63290446 ~ 63290777 (-) True G425820
TU482465 lncRNA downstream 32459 63289718 ~ 63290012 (-) True G425881
TU482462 lncRNA downstream 35076 63287072 ~ 63287395 (-) True G425878
TU482453 lncRNA downstream 52653 63269501 ~ 63269818 (-) True G425870
TU482440 lncRNA downstream 63017 63258020 ~ 63259454 (-) False LOC110524282
TU482478 lncRNA upstream 10206 63333058 ~ 63333575 (-) True G425892
TU482386 lncRNA upstream 86946 63409798 ~ 63417187 (-) False G425811
TU482385 lncRNA upstream 87068 63409920 ~ 63417187 (-) True G425811
TU482553 lncRNA upstream 188336 63511188 ~ 63511413 (-) True G425962
TU482554 lncRNA upstream 190048 63512900 ~ 63513962 (-) True G425963
XM_021603790.2 mRNA downstream 8180 63303764 ~ 63314291 (-) True btbd2a
XM_021603787.2 mRNA downstream 39823 63274631 ~ 63282648 (-) True LOC110524283
XM_021603786.2 mRNA downstream 61990 63257597 ~ 63260481 (-) False LOC110524282
XM_036978029.1 mRNA downstream 107568 62919578 ~ 63214903 (-) True LOC110524279
XM_036978037.1 mRNA downstream 107569 62919578 ~ 63214902 (-) False LOC110524279
XM_036978050.1 mRNA upstream 57947 63380799 ~ 63399318 (-) False si:dkey-110c1.10
XM_036978049.1 mRNA upstream 57947 63380799 ~ 63402249 (-) True si:dkey-110c1.10
XM_021603816.2 mRNA upstream 79594 63402446 ~ 63409136 (-) False LOC110524293
XM_021603814.2 mRNA upstream 79594 63402446 ~ 63409138 (-) False LOC110524293
XM_036978051.1 mRNA upstream 79594 63402446 ~ 63409451 (-) True LOC110524293
TU482381 other downstream 19077 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 62002 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 421968 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 472224 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 514349 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 961116 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 1243829 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 1379022 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 1403075 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1582193 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile