RNA id: TU481939



Basic Information


Item Value
RNA id TU481939
length 519
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G425415
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63390050 ~ 63392234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGTGAGTCGTAGGATCTCCTGGGCTGctttctcctctgccctcctcctctcctccgtctcctcctctgTGATGGCGGTGCTGGGCTGAGACTGCTGAGTCTGGAGCTGGGTCTCTAACTGGTACTCCAGCTTAACTAGCGCCCCCCGCAGGGTGTCCAGCTCAGTGTTGTGGGCCTTACGCTCCGCCTGGAGGGTCTCTCTCAGAGCACCGCTCTCCCtggcctggacacacacacataaacacacacataaacacacacataaacacgcacatacataaacacacacataaacacacacataaacacgcacatacataaacacacacatacccacacacataaacacacacatacataaacacacatacacacacacaaacacacacacacacatacatacacacacacataaatacgcacatacataaacacacacatacacacatacataaacacacacataaacacacacacacaaacacacacatacatacaaacctaaacacacacctaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU481905 lncRNA upstream 11934 63376679 ~ 63378116 (+) True G425385
TU481816 lncRNA upstream 67787 63321778 ~ 63322263 (+) True G425308
TU481875 lncRNA upstream 133294 63256536 ~ 63256756 (+) True G425359
TU481870 lncRNA upstream 138221 63251503 ~ 63251829 (+) True G425354
TU481761 lncRNA upstream 276198 63110822 ~ 63113852 (+) False G425260
TU481956 lncRNA downstream 17579 63409813 ~ 63417222 (+) True G425431
TU481907 lncRNA downstream 38583 63430817 ~ 63431584 (+) True G425387
TU482001 lncRNA downstream 71878 63464112 ~ 63466056 (+) True G425466
TU481961 lncRNA downstream 102547 63494781 ~ 63495693 (+) True G425433
TU481963 lncRNA downstream 110507 63502741 ~ 63504186 (+) True G425434
XM_036978044.1 mRNA upstream 13835 63322539 ~ 63376215 (+) False unc13a
XM_021601329.2 mRNA downstream 162404 63554638 ~ 63557123 (+) True foxq2
XM_021603820.2 mRNA downstream 221663 63613897 ~ 63637179 (+) True onecut3a
XM_021601330.2 mRNA downstream 277967 63670201 ~ 63672004 (+) True si:dkey-172o19.2
XM_021603821.2 mRNA downstream 284175 63676409 ~ 63684848 (+) False nfil3-4
XM_021603827.2 mRNA downstream 396890 63789124 ~ 63798667 (+) False peak3
TU481721 other upstream 338520 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 1083113 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 1284178 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1668026 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2694145 60694257 ~ 60695905 (+) True LOC110524226
TU482675 other downstream 284180 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 784794 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 784794 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 784794 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 851368 64243602 ~ 64244529 (+) True LOC110522985

Expression Profile