RNA id: TU481963


Basic Information

Item Value
RNA id TU481963
length 1400
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G425434
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63502741 ~ 63504186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGTTAGAATATGATTTTGAATTGTACAGTTATTTTTGAAAAGGAGACAAATGTGTCCCTGAGGCCCCAGCATCAGGTAAATGATGTCACACCAATCTACACCTCAACCAtctggttgtcactagttaccacagccaaagTCAAATGGCTATACCGTAAAAACtaatgaaaacaaacatttgctttttggtcttaaggttaggcataaggttaaaGTCAGATTTTAATAAgttaaattgtagaaataggcgatAATTAGCCATaaatgactttGTGGCATCAGTTCCAATACTGGtatttgtgattttattgtgTCTGACTTTTGTAACAACTGAAGGCGATTCGAAGCTTAATAAAATATTTTAATTGTATTGTCTTTTAATACGAAGATATAAAAGACAAACAAAACATTTACATAATGGGTTGCAAGCCCTGCCCATGCTACCTTAAGCATTGTTATAATAAGGAATGCCACCATCAAGACCTGATCCACCATTTGCTTAAAACCCAGTCTGGACCCTAACCCAGGTTTCACCATCTGGCTCAGTTCCTCAGAAACAACCTGTACTTCACCTCTGTCTCGCAATATGAAAAAGCTTGAGGAAAACTATTATCTGCGCAGTGATGTTCTACACTTATAAATTAAAACAACTCGATTCAAATCTGTAGAGTAATTTGTTGGATAGATTGGCTTAGTTTAAGATGAAATTCTGCTAGACATAATAAGATGTTGCTTAAAATGCATGAATCATACAACTATGGTCATATTCAGGGACACCGCTACGGTTTGGGGTTCTTTGACAGAAAGTGCCATCAAACAATGCGTGTTACCTATAATTGTTTCAGAACTCACCTATCGGTATAACATCCGCAAGCTAGAAATATATGGAAATGAGTACTGCAGAAAAGTGGAAGACAAGATCCCATACGTTTCCTCAGTCAATACCATCTCATTATTAGATTAGGTATACTACTACATCTTCCACAAAATGGCTTACTCATACAGTACTGAGTGTCTATGCAAGTCTGAATTCACGATGATCACAAAATGTCAATATGCTTATGCTATAGTCAAATGCATGTATTACCAATACCATTTGAGAGACTTCTAGGAATTTACAACAGACTCTGTTCTATAAAATCCTGAAAGTAGACAAACGCCATAAACAGCACAAATTAAAACGGGGACTATCGCTGGGGTGAGGAATCTAATGACCAGGAATGAAAATATTAAAAGTTTGTAAGTCTCAGCAACCCTTGTAACCCAAAAGATGAACCATGTTTACTACAATTTGAACTGTGCCTGTGGAAAAAGCTCATCTGAAGCAGTAATTACTGTTGTATCGTTTAAACTACCTGTAGAGAGGACATTCATCTAGGGCCTATGCAATAATAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481961 lncRNA upstream 7048 63494781 ~ 63495693 (+) True G425433
TU482001 lncRNA upstream 36685 63464112 ~ 63466056 (+) True G425466
TU481907 lncRNA upstream 71157 63430817 ~ 63431584 (+) True G425387
TU481956 lncRNA upstream 85519 63409813 ~ 63417222 (+) True G425431
TU481939 lncRNA upstream 110507 63390050 ~ 63392234 (+) False G425415
TU482044 lncRNA downstream 23665 63527851 ~ 63528223 (+) True G425497
TU482054 lncRNA downstream 30227 63534413 ~ 63535221 (+) True G425505
TU482773 lncRNA downstream 293994 63798180 ~ 63802998 (+) False peak3
TU482774 lncRNA downstream 293994 63798180 ~ 63829666 (+) False peak3
TU482776 lncRNA downstream 293994 63798180 ~ 63826738 (+) False peak3
XM_036978044.1 mRNA upstream 126526 63322539 ~ 63376215 (+) False unc13a
XM_021601329.2 mRNA downstream 50452 63554638 ~ 63557123 (+) True foxq2
XM_021603820.2 mRNA downstream 109711 63613897 ~ 63637179 (+) True onecut3a
XM_021601330.2 mRNA downstream 166015 63670201 ~ 63672004 (+) True si:dkey-172o19.2
XM_021603821.2 mRNA downstream 172223 63676409 ~ 63684848 (+) False nfil3-4
XM_021603827.2 mRNA downstream 284938 63789124 ~ 63798667 (+) False peak3
TU481721 other upstream 451211 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 1195804 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 1396869 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 1780717 61721537 ~ 61722024 (+) True G423922
TU478964 other upstream 2806836 60694257 ~ 60695905 (+) True LOC110524226
TU482675 other downstream 172228 63676414 ~ 63684239 (+) True nfil3-4
TU483050 other downstream 672842 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 672842 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 672842 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 739416 64243602 ~ 64244529 (+) True LOC110522985

Expression Profile