RNA id: TU482554



Basic Information


Item Value
RNA id TU482554
length 1063
lncRNA type intronic
GC content 0.42
exon number 1
gene id G425963
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63512900 ~ 63513962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggggaaggttcaccttccaacaggacaacgaccctaagcacacagctgagacagtgcagaagtggctttgggacaagtctcggaatgtccttgagtggcccagccagaacccggactttaACCCTATCaaacatctatggagagacctgaaaatagctgtgcagcaacgctcaccatccaacctgacagctcttgagaggatctgcaaagaagtgggagaaattccccaaatacaggtgtgccaagcttgtagtgtcatacccaagaagactcaatgctgtaatcgcttccaaaggtgcttcaacaaagtactgaataaagggtctgaatatttatgtaaatgtgatattgaaacatttctaaaaacagttttttttgctttgtcattatggggtattgtgtgtcgattgataaggggggaaaaaaacaatttaatccattttagaatgaggctgtaacaaaacgtggaagtCAAGGGGTCAAATACTTTTTGAGTGCAATGCATTCTGTTCATGTATTATGATAAACTTGGGCAAATGTAATTTAATACTTTTAGTTGAAGCCCTgctaaggggcggcagggtagcctagtggttagagcgttggactagtaaccgaaaggttgcaagttcatgtcccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaacctgcttgcctagttaaataaaggtaaaaaaaaaaaaaaatgaaatgcaaattaaaataaataaattctcCCCCCAagcaatgggagtcgttgtcccaaaggcaggaAGGCAAGTTTAGGTTCAAAATAAAGCTAACACATTgggcttcgcctcttcctctctgttgcgTTTCTCTGCCATCGTTAGACATGTGACTGCCTATCCTATCAATAGCTGGATAGAAGATGCATATCATTCATTCCAGCGGGAGGGCTCGACAGACTAGCGAATTAAACTTTTAAATGAAAAGTAGCCTAATTAATATGAAGTGGAAAATGTAACCAACTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU482553 lncRNA downstream 1487 63511188 ~ 63511413 (-) True G425962
TU482386 lncRNA downstream 95713 63409798 ~ 63417187 (-) False G425811
TU482385 lncRNA downstream 95713 63409920 ~ 63417187 (-) True G425811
TU482478 lncRNA downstream 179325 63333058 ~ 63333575 (-) True G425892
TU482471 lncRNA downstream 189888 63322563 ~ 63323012 (-) True G425886
TU482555 lncRNA upstream 2286 63516248 ~ 63516504 (-) True G425964
TU482557 lncRNA upstream 4559 63518521 ~ 63518796 (-) True G425966
TU482559 lncRNA upstream 9951 63523913 ~ 63524112 (-) True G425968
TU482606 lncRNA upstream 76688 63590650 ~ 63590864 (-) True G426014
TU482711 lncRNA upstream 127485 63641447 ~ 63641775 (-) True G426112
XM_021603819.2 mRNA downstream 10533 63492427 ~ 63502367 (-) True LOC110524297
XM_021603813.2 mRNA downstream 21295 63462504 ~ 63491605 (-) True LOC110524292
XM_021603811.2 mRNA downstream 69471 63417964 ~ 63443429 (-) True LOC110524290
XM_021603807.2 mRNA downstream 69472 63417964 ~ 63443428 (-) False LOC110524290
XM_021603801.2 mRNA downstream 69473 63417964 ~ 63443427 (-) False LOC110524290
XM_021603822.2 mRNA upstream 189658 63703620 ~ 63744699 (-) True lingo3a
XM_021603823.2 mRNA upstream 266767 63780729 ~ 63783015 (-) False org
XM_021603826.2 mRNA upstream 266771 63780733 ~ 63783015 (-) False org
XM_021603825.2 mRNA upstream 266773 63780735 ~ 63783014 (-) False org
XM_021603824.2 mRNA upstream 266773 63780735 ~ 63783015 (-) False org
TU482381 other downstream 209506 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 252431 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 612397 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 662653 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 704778 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 770006 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 1052719 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 1187912 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 1211965 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1391083 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile