RNA id: TU482711



Basic Information


Item Value
RNA id TU482711
length 201
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G426112
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63641447 ~ 63641775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCACATTGGTTTTGCCTCATAAATGGAACTGCAACCTTTTTTAACAGGCCCCGCCTTTTTCTGGAGCTGTTTTCTTCCAGTCTCTGTATGAGAATTGGTTCATCATCCTGTACAACGTCTTCTACACTGACATGCCAGTAGAATGCCTGGGCTTTTTTCAGCAGGAGATGAGGGCAGTCTGAGCTCCATAAGGTTGGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU482606 lncRNA downstream 50583 63590650 ~ 63590864 (-) True G426014
TU482559 lncRNA downstream 117335 63523913 ~ 63524112 (-) True G425968
TU482557 lncRNA downstream 122651 63518521 ~ 63518796 (-) True G425966
TU482555 lncRNA downstream 124943 63516248 ~ 63516504 (-) True G425964
TU482554 lncRNA downstream 127485 63512900 ~ 63513962 (-) True G425963
TU483259 lncRNA upstream 68797 63710572 ~ 63779992 (-) True G426613
TU483272 lncRNA upstream 100186 63741961 ~ 63769021 (-) True G426626
TU483253 lncRNA upstream 156405 63798180 ~ 63802998 (-) True LOC110524304
TU483325 lncRNA upstream 185372 63827147 ~ 63831686 (-) True LOC110524305
TU483350 lncRNA upstream 307679 63949454 ~ 63951278 (-) False G426695
XM_021603817.2 mRNA downstream 106382 63502616 ~ 63535065 (-) True LOC110524294
XM_021603819.2 mRNA downstream 139080 63492427 ~ 63502367 (-) True LOC110524297
XM_021603813.2 mRNA downstream 149842 63462504 ~ 63491605 (-) True LOC110524292
XM_021603811.2 mRNA downstream 198018 63417964 ~ 63443429 (-) True LOC110524290
XM_021603807.2 mRNA downstream 198019 63417964 ~ 63443428 (-) False LOC110524290
XM_021603822.2 mRNA upstream 61845 63703620 ~ 63744699 (-) True lingo3a
XM_021603823.2 mRNA upstream 138954 63780729 ~ 63783015 (-) False org
XM_021603826.2 mRNA upstream 138958 63780733 ~ 63783015 (-) False org
XM_021603825.2 mRNA upstream 138960 63780735 ~ 63783014 (-) False org
XM_021603824.2 mRNA upstream 138960 63780735 ~ 63783015 (-) False org
TU482381 other downstream 338053 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 380978 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 740944 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 791200 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 833325 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 642193 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 924906 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 1060099 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 1084152 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 1263270 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile