RNA id: TU482777



Basic Information


Item Value
RNA id TU482777
length 744
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G426172
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63822737 ~ 63823909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTAATAATTATCATAAAAAGGCAAATAAACAAAAGCAAATTTCAATTTGTCATTACACATCTAAGATAATAGCACCAACACCAGACAAGAGTTCCCATGACAGCCCAAGGCGTTTTGAAACGTAGGTTTGCTGTTATTGCACCTCAAACCTGCCCTTAGTTCTACTGATCCACATAGAGTTAAAATTCAGTCCAACTACACAGCGTTCTCCCTATGTAGGGATCACaacacaaaaaacaaaaaaaaggacATTAATTCCTtttcagagagagggagtgagacgaGGCATTTGTGAGAGTGTAAGAAGAGGATTTCCACGACATTGTCAGACCAGTCGAACACAAAGCTGCAATCTTTTGCTGGAGTGGCTGGATGTGTGCGACAGTGAGAAATTGAGGAGACAAACATACATCTTCGAGGAAGTTTGTCAACTCCAAGCACCAATGATTTTTCAAGTTACATCAAAATATAAGAGAGAGGAAGTGTATTAATCAGTAGCTGCATTTTCCTTGTTTTAAGTGTAGGAGAGCACCGTACTGTCTGTCTAAGAGTATTCCAATTTGATCTGAATCTTATGTCATAATAAAAGCATAATTGATACCAACTGCAATTATATcaaacaaaaaaataatgaaaacatCAACAATAACAGTAATTACAAAAGACCTGTCAGTGCTGATAACAGGGGACTAGCTTCTCTGGTCATGACCGACATGAGCAAATCATTGTCCTCATTCCTGATTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU482827 lncRNA upstream 4424 63816685 ~ 63818313 (+) True LOC110524307
TU482773 lncRNA upstream 19739 63798180 ~ 63802998 (+) False peak3
TU482775 lncRNA upstream 22565 63799632 ~ 63800172 (+) True peak3
TU482054 lncRNA upstream 287516 63534413 ~ 63535221 (+) True G425505
TU482044 lncRNA upstream 294514 63527851 ~ 63528223 (+) True G425497
TU482856 lncRNA downstream 43556 63867465 ~ 63867704 (+) True G426248
TU482778 lncRNA downstream 45467 63869376 ~ 63871991 (+) False G426173
TU482779 lncRNA downstream 45467 63869376 ~ 63872095 (+) True G426173
TU482889 lncRNA downstream 89676 63913585 ~ 63915197 (+) True G426278
TU482894 lncRNA downstream 105357 63929266 ~ 63932609 (+) True G426283
XR_002473571.2 mRNA upstream 4737 63816548 ~ 63818000 (+) False LOC110524307
XM_021603827.2 mRNA upstream 24070 63789124 ~ 63798667 (+) False peak3
XM_021603821.2 mRNA upstream 137889 63676409 ~ 63684848 (+) False nfil3-4
XM_021601330.2 mRNA upstream 150733 63670201 ~ 63672004 (+) True si:dkey-172o19.2
XM_021603820.2 mRNA upstream 185558 63613897 ~ 63637179 (+) True onecut3a
XM_021603842.2 mRNA downstream 322187 64146096 ~ 64158106 (+) False crlf1b
XM_021603843.2 mRNA downstream 322187 64146096 ~ 64158106 (+) False crlf1b
XM_021603844.2 mRNA downstream 322187 64146096 ~ 64158106 (+) False crlf1b
XM_021603845.2 mRNA downstream 322187 64146096 ~ 64158106 (+) False crlf1b
XM_036978057.1 mRNA downstream 322187 64146096 ~ 64158106 (+) True crlf1b
TU482675 other upstream 138498 63676414 ~ 63684239 (+) True nfil3-4
TU481721 other upstream 771207 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 1515800 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 1716865 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 2100713 61721537 ~ 61722024 (+) True G423922
TU483050 other downstream 353119 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 353119 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 353119 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 419693 64243602 ~ 64244529 (+) True LOC110522985
TU484247 other downstream 1168192 64992101 ~ 64997138 (+) True G427476

Expression Profile