RNA id: TU482898


Basic Information

Item Value
RNA id TU482898
length 1747
lncRNA type intronic
GC content 0.49
exon number 2
gene id G426287
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 63940530 ~ 63943183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACTCCCCCTCCTCAGATCTGCATTAGGAAGAACACAACACCTCTGCTGCTGCTATCCCTGAAGGGGTAGTAACACTGAACACAGAACGGATGGCTATACTGAGCCAgtcatgtgtatgtatgtaccgTATCTACAGTACTGCCCACCACCACAAGAGGGCAGTGTGGAACTactgagagaggcaggtagagCACAAAGCCAaactgaaacacaacaaacaaagcCTGGATGAACAACAGCACAATACACACTCATTGTCATTCCTTTCTTACATTCCAGCGGGCAGAGGCAGCAGCTCTACAGGCTCATGGCATGGTAACATGTCAGCTCGGTGGGGAGAGACTGCCCCGAGTGTCCGTCCCCCCCGAGGAGACTGGAGAACAGTGCGCTGACAGTCGTTTAGCATGTTTCTGTGAGTCACTGCCGTGTATCTATGATTCCTGCCTCAGCGGTCAGGAATGTCAGTCGATATGCTACTTCCAGACTAGGCTACAGACAGACCGTTGATAAAGTGAACAACAGagtggttggtggtggtagtagagagagcgagagcgagagaaagagaaagagaaagagagaaagagaaagataaagagagagagagaagggttggcCCAGGAATGCCAACATTCCTTCTCCAGTGGTCCCATTCACTCATCACTTCTTCTTCCATTAAGTATTTTCAAACTTTTACCTCTAGGATCCAGTGTAACCTACCATAGAGACCAAGCCATCTCCAAACACAATGGGTAGTCCAACTCGACAGAGTTCAGCACCTGATTCTCAACAAGAGAGTAGCTACTATACCTAAGCTAGACAAGTCTACCTATCGGTACCTCGACTCAGACACATTCAACTGACCTCAAACTCAGTCTTGATTTAGAGTTTACACCCAGGCTACAGAACTACGATACGTTCAATTGTGATCCAACTTCAATGACAGTTAGCGACTATGGAGAGCCATTCCTGTAACAGAACATATAGATTAGAAACCATCTCTGTTCCATTTATCGCCACCGTTTACTCCTTCAGTGTTTGTAATACCAATGGATTGACATTGTTTTCTTCTATCCCCACTGGGCCAACATGCTGTTAGTGTGAGCCGGCAGTTTCTCCTCGTCCTCTCCTAGTGTGAGTTGGGCCTGCCCTTCCCAGAGGGGCTGCTGCAGTGGAGTTTTGGCGTGAGGATTATTAAGCGGGCTGACCCCTGCTATACCAGGGAGAATCGCAGATCCGGGCCAGACGCCAACATGCAGGCTTTGTGGTCCTCCttccacacttctctctctcctctcctgcaggAGCCTGATCTGAGTCTTGGCCTGTAAGGTACAGATTAGGGGAGTCTTGAAGCTGCGGGGgccccccctctacccccccgCCCAGTCTTCACTCTCTGGGCTGCTGCTACCACGGCAGTTAATTACCCCTCTCTTCTGCATCTGGGACGGATGCTAGAAAACACACTGCCTGCTactactgtacacacatacacacagccatgcacaatcatactgtatccagtactgtacacacacacacagccatgcacaatcatactgtatccagtactgtacacacatacacagccatgcacaatcatactgtatgcagtactgtacacacatacacagccatgcacaatcatactgtatgcagtactgtacacacatacacagccatgcacaatcatactgtatgcagtactgtacacacacagccatgcacaatCATATTGTAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU482894 lncRNA upstream 7921 63929266 ~ 63932609 (+) True G426283
TU482889 lncRNA upstream 25333 63913585 ~ 63915197 (+) True G426278
TU482779 lncRNA upstream 68435 63869376 ~ 63872095 (+) True G426173
TU482778 lncRNA upstream 68539 63869376 ~ 63871991 (+) False G426173
TU482856 lncRNA upstream 72826 63867465 ~ 63867704 (+) True G426248
TU482955 lncRNA downstream 95184 64038367 ~ 64086741 (+) True G426340
TU482995 lncRNA downstream 150453 64093636 ~ 64093875 (+) True G426380
TU483011 lncRNA downstream 181027 64124210 ~ 64124596 (+) True G426395
TU483069 lncRNA downstream 266987 64210170 ~ 64210975 (+) False G426441
TU483070 lncRNA downstream 266987 64210170 ~ 64214053 (+) False G426441
XR_002473571.2 mRNA upstream 122530 63816548 ~ 63818000 (+) False LOC110524307
XM_021603827.2 mRNA upstream 141863 63789124 ~ 63798667 (+) False peak3
XM_021603821.2 mRNA upstream 255682 63676409 ~ 63684848 (+) False nfil3-4
XM_021601330.2 mRNA upstream 268526 63670201 ~ 63672004 (+) True si:dkey-172o19.2
XM_021603820.2 mRNA upstream 303351 63613897 ~ 63637179 (+) True onecut3a
XM_021603842.2 mRNA downstream 202913 64146096 ~ 64158106 (+) False crlf1b
XM_021603843.2 mRNA downstream 202913 64146096 ~ 64158106 (+) False crlf1b
XM_021603844.2 mRNA downstream 202913 64146096 ~ 64158106 (+) False crlf1b
XM_021603845.2 mRNA downstream 202913 64146096 ~ 64158106 (+) False crlf1b
XM_036978057.1 mRNA downstream 202913 64146096 ~ 64158106 (+) True crlf1b
TU482675 other upstream 256291 63676414 ~ 63684239 (+) True nfil3-4
TU481721 other upstream 889000 63045090 ~ 63051530 (+) True G425224
TU480579 other upstream 1633593 62283152 ~ 62306937 (+) False LOC110524265
TU480458 other upstream 1834658 62105523 ~ 62105872 (+) True G424079
TU480287 other upstream 2218506 61721537 ~ 61722024 (+) True G423922
TU483050 other downstream 233845 64177028 ~ 64179386 (+) False sac3d1
TU483051 other downstream 233845 64177028 ~ 64179386 (+) False sac3d1
TU483052 other downstream 233845 64177028 ~ 64179386 (+) True sac3d1
TU483060 other downstream 300419 64243602 ~ 64244529 (+) True LOC110522985
TU484247 other downstream 1048918 64992101 ~ 64997138 (+) True G427476

Expression Profile