RNA id: TU483444


Basic Information

Item Value
RNA id TU483444
length 307
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G426777
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64090430 ~ 64090736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagatcttcgCCACGGAACAACCCAAtggcaccgccctcaaccgcaggctctccagagggtagtgcggtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacagcacccgatgtcacagcaaGGCCAAAAagaccatcaaggacaacaaccaccttgagccactgcctgttcaccccgctatcatcccgaaggcgaggtcagtacaggtgcatcaaagctgggaccgagagactgaaaaacagcttctatctcaaggccatccgactgttaaacagccatcactaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483350 lncRNA downstream 139152 63949454 ~ 63951278 (-) False G426695
TU483348 lncRNA downstream 139152 63949967 ~ 63951278 (-) True G426695
TU483325 lncRNA downstream 258744 63827147 ~ 63831686 (-) True LOC110524305
TU483253 lncRNA downstream 287432 63798180 ~ 63802998 (-) True LOC110524304
TU483259 lncRNA downstream 310438 63710572 ~ 63779992 (-) True G426613
TU483519 lncRNA upstream 110504 64201240 ~ 64205818 (-) True G426842
TU483529 lncRNA upstream 138372 64229108 ~ 64231040 (-) True G426851
TU483542 lncRNA upstream 146894 64237630 ~ 64237921 (-) True G426864
TU483543 lncRNA upstream 149167 64239903 ~ 64240186 (-) True G426865
TU483438 lncRNA upstream 153999 64244735 ~ 64246244 (-) True LOC110524318
XM_021603840.2 mRNA downstream 28147 63929231 ~ 64062283 (-) False ssbp4
XM_036978055.1 mRNA downstream 28253 63932308 ~ 64062177 (-) True ssbp4
XM_021603835.2 mRNA downstream 164845 63912451 ~ 63925585 (-) False fkbp8
XM_021603837.2 mRNA downstream 164845 63913579 ~ 63925585 (-) False fkbp8
XR_002473572.2 mRNA downstream 164845 63913580 ~ 63925585 (-) True fkbp8
XM_036978056.1 mRNA upstream 41841 64132577 ~ 64143786 (-) True tmem59l
LOC110522984 mRNA upstream 67677 64158413 ~ 64169374 (-) True LOC110522984
XM_021603850.2 mRNA upstream 152783 64243519 ~ 64246283 (-) False LOC110524318
XM_036978065.1 mRNA upstream 187878 64278614 ~ 64283386 (-) True LOC118964635
XM_036978066.1 mRNA upstream 193008 64283744 ~ 64294933 (-) False LOC110522986
TU482381 other downstream 787036 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 829961 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 1189927 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 1240183 62850004 ~ 62850247 (-) True G425612
TU482117 other downstream 1282308 62803938 ~ 62808122 (-) True LOC110524277
TU483573 other upstream 193232 64283968 ~ 64286359 (-) True LOC110522986
TU484037 other upstream 475945 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 611138 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 635191 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 814309 64905045 ~ 64910998 (-) True LOC110524332

Expression Profile