RNA id: TU483083


Basic Information

Item Value
RNA id TU483083
length 254
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G426453
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64241944 ~ 64242197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgatgtttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaataaatttgatttgatgagcttCCTGAATGGAAGAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483070 lncRNA upstream 27891 64210170 ~ 64214053 (+) False G426441
TU483071 lncRNA upstream 27891 64210170 ~ 64214053 (+) True G426441
TU483069 lncRNA upstream 30969 64210170 ~ 64210975 (+) False G426441
TU483011 lncRNA upstream 117348 64124210 ~ 64124596 (+) True G426395
TU482995 lncRNA upstream 148069 64093636 ~ 64093875 (+) True G426380
TU483088 lncRNA downstream 7945 64250142 ~ 64250504 (+) True G426458
TU483095 lncRNA downstream 18305 64260502 ~ 64260741 (+) True G426465
TU483097 lncRNA downstream 18957 64261154 ~ 64262621 (+) True G426467
TU483122 lncRNA downstream 55245 64297442 ~ 64298014 (+) True LOC110524320
TU483204 lncRNA downstream 176022 64418219 ~ 64466996 (+) True G426564
XM_036978062.1 mRNA upstream 4856 64184447 ~ 64237088 (+) True LOC110524317
XM_036978059.1 mRNA upstream 58806 64177055 ~ 64183138 (+) False sac3d1
XM_036978060.1 mRNA upstream 58806 64177055 ~ 64183138 (+) False sac3d1
XM_036978061.1 mRNA upstream 58806 64178381 ~ 64183138 (+) False sac3d1
XM_021603848.2 mRNA upstream 58806 64179520 ~ 64183138 (+) False sac3d1
LOC110522985 mRNA downstream 956 64243153 ~ 64244790 (+) False LOC110522985
XM_036978064.1 mRNA downstream 5300 64247497 ~ 64275958 (+) False shc2
XM_021603853.2 mRNA downstream 5301 64247498 ~ 64275958 (+) False shc2
XM_021603852.2 mRNA downstream 5304 64247501 ~ 64275956 (+) False shc2
XM_021603854.2 mRNA downstream 9857 64252054 ~ 64275958 (+) False shc2
TU483050 other upstream 62558 64177028 ~ 64179386 (+) False sac3d1
TU483051 other upstream 62558 64177028 ~ 64179386 (+) False sac3d1
TU483052 other upstream 62558 64177028 ~ 64179386 (+) True sac3d1
TU482675 other upstream 557705 63676414 ~ 63684239 (+) True nfil3-4
TU481721 other upstream 1190414 63045090 ~ 63051530 (+) True G425224
TU483060 other downstream 1405 64243602 ~ 64244529 (+) True LOC110522985
TU484247 other downstream 749904 64992101 ~ 64997138 (+) True G427476
TU484227 other downstream 782518 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other downstream 782518 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other downstream 782518 65024715 ~ 65028702 (+) False LOC110524338

Expression Profile