RNA id: TU483751



Basic Information


Item Value
RNA id TU483751
length 220
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G427030
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64509545 ~ 64509764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCGGCACCATTTTTTTCTAAAGGAAACCCAGCTGTTTCCCAGTGATGCGAGCctgccagatgagctaaatgccttctatgctcacttagaggcaaacaacactgaaccatgtgtaagagcaccagctgttataGACGACTGTAttatcacgctctctgtagccgatgtgtgtaagacctcaattacctcgtactcaTGCACATGGACTCGATACTGGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU483744 lncRNA downstream 5050 64504107 ~ 64504495 (-) True G427023
TU483715 lncRNA downstream 35023 64470102 ~ 64474522 (-) True G427005
TU483666 lncRNA downstream 100285 64408686 ~ 64409260 (-) True LOC110524323
TU483664 lncRNA downstream 101086 64407679 ~ 64408459 (-) False LOC110524323
TU483647 lncRNA downstream 129026 64377557 ~ 64380519 (-) True LOC110524322
TU483754 lncRNA upstream 11 64509775 ~ 64510050 (-) True G427033
TU483758 lncRNA upstream 3690 64513454 ~ 64513750 (-) True G427037
TU484035 lncRNA upstream 58729 64568493 ~ 64570074 (-) True LOC110524326
TU484113 lncRNA upstream 209123 64718887 ~ 64775461 (-) True G427360
TU484143 lncRNA upstream 270111 64779875 ~ 64780140 (-) True G427386
XM_021603860.2 mRNA downstream 92788 64407229 ~ 64416757 (-) False LOC110524323
XM_036978072.1 mRNA downstream 92788 64407229 ~ 64416757 (-) False LOC110524323
LOC110524322 mRNA downstream 126999 64379050 ~ 64382546 (-) False LOC110524322
XM_036978067.1 mRNA downstream 212169 64283744 ~ 64297376 (-) False LOC110522986
XM_036978066.1 mRNA downstream 214612 64283744 ~ 64294933 (-) False LOC110522986
trnaq-uug mRNA upstream 4987 64514751 ~ 64514822 (-) True trnaq-uug
XM_036978077.1 mRNA upstream 58720 64568484 ~ 64644073 (-) False LOC110524326
XM_036978078.1 mRNA upstream 58720 64568484 ~ 64644073 (-) False LOC110524326
XM_036978079.1 mRNA upstream 58720 64568484 ~ 64644074 (-) False LOC110524326
XM_036978080.1 mRNA upstream 58720 64568484 ~ 64644074 (-) False LOC110524326
TU483573 other downstream 223186 64283968 ~ 64286359 (-) True LOC110522986
TU482381 other downstream 1206151 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 1249076 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 1609042 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 1659298 62850004 ~ 62850247 (-) True G425612
TU484037 other upstream 56917 64566681 ~ 64568380 (-) True G427287
TU484034 other upstream 192110 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 216163 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 395281 64905045 ~ 64910998 (-) True LOC110524332
TU484709 other upstream 489944 64999708 ~ 65011598 (-) False G427902

Expression Profile