RNA id: TU484143



Basic Information


Item Value
RNA id TU484143
length 266
lncRNA type intronic
GC content 0.36
exon number 1
gene id G427386
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64779875 ~ 64780140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaattatacTGTCAATACGCCATAATAGACATGACCATTGAAGTTGACGTTATATGGTGGGTGAACCAGCGGTCATTTTTGTGGTAGTAATTAGAAGGTCAATGCTTTAAAAAAATCTATGGTGTAGCCTACCagctaaattgcagtggtctgaaagAATGAGTCCAttatattaattatatttctGTGCTTGAAATGACATCCTGTATTGAAGAGCATGTCTCAACCAATGATGTAccctgaacaaaatataaacgcaacatgca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU484113 lncRNA downstream 4414 64718887 ~ 64775461 (-) True G427360
TU484035 lncRNA downstream 209801 64568493 ~ 64570074 (-) True LOC110524326
TU483758 lncRNA downstream 266125 64513454 ~ 64513750 (-) True G427037
TU483754 lncRNA downstream 269825 64509775 ~ 64510050 (-) True G427033
TU483751 lncRNA downstream 270111 64509545 ~ 64509764 (-) True G427030
TU484732 lncRNA upstream 146130 64926270 ~ 64926746 (-) True G427909
TU484733 lncRNA upstream 147632 64927772 ~ 64928219 (-) True G427910
TU484731 lncRNA upstream 210648 64990788 ~ 64991018 (-) True LOC110524335
TU484729 lncRNA upstream 213965 64994105 ~ 64997116 (-) True G427906
TU484710 lncRNA upstream 230413 65010553 ~ 65011598 (-) True G427902
XM_021603868.2 mRNA downstream 78480 64664327 ~ 64701395 (-) True LOC110524329
XM_021603869.2 mRNA downstream 78484 64664327 ~ 64701391 (-) False LOC110524329
XM_036978079.1 mRNA downstream 135801 64568484 ~ 64644074 (-) False LOC110524326
XM_036978080.1 mRNA downstream 135801 64568484 ~ 64644074 (-) False LOC110524326
XM_036978078.1 mRNA downstream 135802 64568484 ~ 64644073 (-) False LOC110524326
XM_021603875.2 mRNA upstream 122899 64903039 ~ 64911196 (-) False LOC110524332
XM_021603876.2 mRNA upstream 149704 64929844 ~ 64947418 (-) True LOC110524333
XM_036978085.1 mRNA upstream 159126 64939266 ~ 64982684 (-) False LOC110524334
XM_021603877.2 mRNA upstream 167926 64948066 ~ 64982684 (-) False LOC110524334
XM_021603878.2 mRNA upstream 167926 64948066 ~ 64982684 (-) False LOC110524334
TU484039 other downstream 46903 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 73850 64701874 ~ 64706025 (-) False LOC110524330
TU484037 other downstream 211495 64566681 ~ 64568380 (-) True G427287
TU483573 other downstream 493516 64283968 ~ 64286359 (-) True LOC110522986
TU482381 other downstream 1476481 63300924 ~ 63303394 (-) True G425810
TU484689 other upstream 124905 64905045 ~ 64910998 (-) True LOC110524332
TU484709 other upstream 219568 64999708 ~ 65011598 (-) False G427902
TU484971 other upstream 589976 65370116 ~ 65382590 (-) False G428132
TU486620 other upstream 2006911 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 3030465 67810605 ~ 67816544 (-) False lrrc7

Expression Profile