RNA id: TU484247


Basic Information

Item Value
RNA id TU484247
length 4789
RNA type TUCP
GC content 0.42
exon number 2
gene id G427476
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64992101 ~ 64997138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAGAAAACTCAACTAGCAATcaagtcgcagcaatgaagaattgCGTGTGTGCGCGTTCACGTGATGGGGTAATTCTGTCAGGGAGATTTGCAGCACAACAGCTGTTCGGCTCCGTAAAACATGAGCCTATCACAATAGCCTAATTAAAACAAAATGTCAAGGAAACTGTAGGCAATTAAActatttacaaaaaatatttccGCAGATCAGAGGCATGAAAAATGAACGAATAGACTTGAAAACGGGTGGTATAACCTAGGCTCCAAAATGCGATATGGTTCGACGAGAACACTGACATTTTGACAAGGCAGAGATGAGTGGCTGGACCAGTGATGCCAAtttagcaattttgttgctagatttagcaacTTTCCAGACTACCCTGCAACTTTTTTTTCAAACAGCACCTAGCAACAAATttagctacttttaaaaatgtatttgaaacttTTAGCAACTCTTGAAAAGTGATTCAAACGCTAAAAATGCACacattttccctctaaatgacacaaaaaactattttctctgtcacacactcagTCTCAACACACGTGCCTGActgcaaaagtgcattgtgagtgaTGTCAGCAGCAGGCATTCAGCTCGTGCACAGGCAGCAGCAGGTCAGCAGCAATTTCAGTAAATTGCAAATCATTCTTGGATGACTGCAGCGTTTGACGAGATaaacccaatgaatatagttggttaCGAATGGttgatcttgaacagaacttacaacatGTCTCAATCAAAATTGTACAACCAGAAGTACAGAAAATAGTGGGAGTCTGTACCTGAAATGAAAGGGTCGCTGAAGCCAGTAATTGGGGATGATTGTCGGGCATACTGTGCATACTGCAAATCAGATATGCTTGCAAAAATGTATGCCTTCAAAAAACATTGTGCTACAGCAAAGCATATAAATAAATCAAAACCGTACAACTCCACAACGCAGTCTACATTACCACAGTTTAAGAAAGTGGATAACTGCAAAAGTGCAGAAGCTACTATGGCAATGGCCATTGCGGAGCATTGTTCGCTGCTAGCATGCGACCATTTAGGTATGGCTTGCAATGCTGCCTTTTCAGAATCCGTGGCAGCAACAAACTTCCAAATGCACCGCACAAAgtaattctagatttaattttagattggagatgcttaatgtgagtctggagggagagtttacagtctagccagacacctaggtatttgtagttgttcacatattctaagtcagaaccgtccagagtagtgatgctagacgggcgggcgggtgctgaagagcatgcatttagttttacttgcatttaagagcagttggaagccacagaaggagtgttgtatggcattgaagctcatctggaggtttgttaacacagtgttcaaagaagggccagaagtatacagaatggtgtcgtctgcgtagaggtgaatcagagaatcaccagcagcaagagagacatcattgatgtatacagagaaaagagtccgcccgagaatttaaccctgtggcacccccatagagactgccagaggtccggacaagagaggccctcctatttgacacactgaactctatctgagaagtagttggtgaaccaggtgaggcagtcatttgagaaaccaaggctgttgagtctgccgataagaatgctgtgattgacagtcaaaagtcttggccaggtcgatgaagacggcagtacagtattgtcttttatcgatggcggttatgatatcgtttaggaccttgagcgtggctgaggtgcacccatcaaatcaaatcaaaatcaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcgaataatattaaggcagaacagttgaaactggagcagcagcacagccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagagagaaggagagaattagagaacgcacacctagattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccctagccccccgacacaaactactactgcagcataaatactggaggctgagacaggaggggtcaggagattaTTAAAGATTGACTTCAAGATATTAAGATTGATTTcaagtgtccctgtgtaagaatttccacaacaGTACCAAAgccaagaagacagtggcctccatcatccttaaatggaggaagtttggaaccaccaagactcgtcctagagctggccgcccggccaaactgagaaatcgggggagaatggccttggtcagggaggtgactaagaacccgatggccactctgacacagctctagagttcctctgtggagatgagagaaccttccagaatgacaaccatctctgcagcactccaccatccagacggaagccacttctcagtaaaaggcacatgatagcttGCTTGTAGTTAGCCAAAAGATCAAGACAAACAACATTCTGtcatctgatgaaaccaagattgaactctttggcctgaatgccaagtgtcacgtctggaggaaacctggcaccatccctatggtgaagcatgggggtggcagcatcatgctgtggggatgtttttcagtggcagggactgggaaactagtcaggattgaggctaAGATGGACggagcaaggtacagagagatccttgatgaaaaccttctccagagcgctcaggacctcagactgggacgacggttcaccttccaacaggacaacagccttaagcacacagccaaggcaaagcaggagtggcttctcaggagagacctgaaagaaactatgcagcaacgctccccatccaacctgacagagtttcagcggatctacagagaagaatctgagaaactccccaaatacaggtgtgccaagcttgtagaaaACTCAAGgttataatcgctgccaaaagtgcttcaacaaagtactgagtaaagggtctgaatacttaggaaaatgtgatatttcagttcgattttttaaattagcaaaaatgtataaaaactgtttttgctttgtcattatgggttattgtgtgtagattgaggagaagaaaaaaacaatttaatcgaTTTTATAATTAAACTATAACCTAACTAAATGTGGGAAAATCAAGGGGTtaggctattgatgatttgagaaagtcgcAAAAAAAGCACTCttttccttgcctcaggctgcaaaagctgttctctcattaagtgatcatattttcaatgatcagactattctcaattgaaTCTTGTCTTTACAAATATGTACAATTTGTTTAGctttagaatggcccattatcaaatgAGAGGAACATGGGTGGGGGAATAAAGACGTCATCTGTATACACTCAAATAGAAAATGGAGGCTTTCCCACCAGTCCGTTTGTCAATGATGCCGGGTAGGCTACTTCCGTTTTATAGTGGAGATATGCTTAATATGAGCtgctgagaaataaatataagaATACTTATTTCACTCCAAGCGTCATCCACTGTTTGAGAATCGCTGCACGACTGGTGATATTCCGtccaaactctgtatgccatgggttCTCCAACCCTAATCCTGCAGCTATCCAGTGcttcatttgggaaaccaagtgaaatctgttcggaaacatcgatagtaacatgttttcgcAAAGGAACATAATTCACTAAACTGTTGCCCCTCTGCGCACTCGAGAAAGGAATAAATTAGAGAGCGGATGAGATGcatggtggtgagatattctgtatagCTGAAGGTAATGTGTCGcccaattaattatgaaaatataaaaatTCCCTATTACTTGGCTATTCAAAATACATATTCAAATACATATTcactaattgtaggctaactgtacgctgccctgcacaatcaatgaaccaacagcaccGCCTAGGGCTATActttctctcccagactcatggattGACATTTTGGAgtgtagcataaggtaaccagtccaccCAGTATGCATAATAATGAAATCCACACTCAAAAACGATGactgaaatgtgttttatttCGGGGCATAGGCCTGACAAATTATGTCCCAAAGACATTTGAAAATCAGTTTTGTTTTACGTTTTTCTGCAATGCTTAATATAtggtaggctatgtattgtataatggcacaatcataataaaaaataaaacaaattaaacGGGCTTGGGCTTTTAAGCACATGCGTATGCATAACCTATAATATGCATATGGATGTTTTGAGTTAATCATCACCTTAGCGCTgtctattttgttgtgttaggctTTCAAACAACATCCAGAACTACCATGTTttacactcagtttcaacctgctgttgaacttctttcttcaaattgatcatcacagtTATGTGAGTTTGATAGTGTTGATGATTTACTTAcaggagagttgagaccaaatcatggacgctggacagagtggatttcagttgtaacaaaaaggcagtttattgagtcaaaagatatcttgtcctgcagTTTTAACGTGCAAGGACCTGATTCATATAACTCAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484265 lncRNA upstream 62777 64929111 ~ 64929324 (+) True G427492
TU484264 lncRNA upstream 63009 64928434 ~ 64929092 (+) True G427491
TU484263 lncRNA upstream 64312 64926912 ~ 64927789 (+) True G427490
TU483859 lncRNA upstream 269221 64711678 ~ 64722880 (+) True G427123
TU483895 lncRNA upstream 282331 64708978 ~ 64709770 (+) True G427157
TU484250 lncRNA downstream 1431 64998569 ~ 65009663 (+) True LOC110524337
TU484302 lncRNA downstream 51196 65048334 ~ 65048632 (+) True G427529
TU484304 lncRNA downstream 53603 65050741 ~ 65051118 (+) True G427531
TU484342 lncRNA downstream 116612 65113750 ~ 65128405 (+) True G427563
TU484405 lncRNA downstream 227014 65224152 ~ 65224364 (+) True G427626
XM_036978081.1 mRNA upstream 149246 64811241 ~ 64842855 (+) False LOC110524331
XM_036978082.1 mRNA upstream 149246 64811242 ~ 64842855 (+) False LOC110524331
XM_036978083.1 mRNA upstream 149246 64830439 ~ 64842855 (+) False LOC110524331
XM_036978084.1 mRNA upstream 149246 64830440 ~ 64842855 (+) True LOC110524331
XM_036978074.1 mRNA upstream 423697 64520297 ~ 64568404 (+) False tle2a
XM_021603892.2 mRNA downstream 2528 64999666 ~ 65009427 (+) False LOC110524337
XM_036978088.1 mRNA downstream 2528 64999666 ~ 65011577 (+) False LOC110524337
XM_021603891.2 mRNA downstream 2528 64999666 ~ 65011606 (+) False LOC110524337
XM_021603889.2 mRNA downstream 2579 64999717 ~ 65011606 (+) False LOC110524337
XM_021603893.2 mRNA downstream 27306 65024444 ~ 65028828 (+) False LOC110524338
TU483060 other upstream 747572 64243602 ~ 64244529 (+) True LOC110522985
TU483050 other upstream 812715 64177028 ~ 64179386 (+) False sac3d1
TU483051 other upstream 812715 64177028 ~ 64179386 (+) False sac3d1
TU483052 other upstream 812715 64177028 ~ 64179386 (+) True sac3d1
TU482675 other upstream 1307862 63676414 ~ 63684239 (+) True nfil3-4
TU484227 other downstream 27577 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other downstream 27577 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other downstream 27577 65024715 ~ 65028702 (+) False LOC110524338
TU484230 other downstream 27577 65024715 ~ 65028702 (+) True LOC110524338
TU484533 other downstream 456718 65453856 ~ 65521380 (+) True G427747

Expression Profile