RNA id: TU484729


Basic Information

Item Value
RNA id TU484729
length 2992
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G427906
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64994105 ~ 64997116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTGCACGTTAAAActgcaggacaagatatcttttgactcaataaactgcctttttgttacaactgaaatccactctgtccagcgtccatgatttggtctcaactctcctgTAAGTAAATCATCAACACTATCAAACTCACATAactgtgatgatcaatttgaagaaagaagttcaacagcaggttgaaactgagtgtaaAACATGGTAGTTCTGGATGTTGTTTGAAagcctaacacaacaaaatagacAGCGCTAAGGTGATGATTAACTCAAAACATCCATATGCATATTATAGGTTATGCATACGCATGTGCTTAAAAGCCCAAGCCCgtttaatttgttttattttttattatgattgtgccattatacaatacatagcctaccaTATATTAAGCATTGCAGAAAAACGTAAAACAAAACTGATTTTCAAATGTCTTTGGGACATAATTTGTCAGGCCTATGCCCCGaaataaaacacatttcagtCATCGTTTTTGAGTGTGGATTTCATTATTATGCATACTGggtggactggttaccttatgctacacTCCAAAATGTCaatccatgagtctgggagagaaagTATAGCCCTAGGCggtgctgttggttcattgattgtgcagggcagcgtacagttagcctacaattagtgAATATGTATTTGAATATGTATTTTGAATAGCCAAGTAATAGGGAatttttatattttcataattaattgggCGACACATTACCTTCAGctatacagaatatctcaccaccatgCATCTCATCCGCTCTCTAATTTATTCCTTTCTCGAGTGCGCAGAGGGGCAACAGTTTAGTGAATTATGTTCCTTTgcgaaaacatgttactatcgatgtttccgaacagatttcacttggtttcccaaatgaagCACTGGATAGCTGCAGGATTAGGGTTGGAGaacccatggcatacagagtttggaCGGAATATCACCAGTCGTGCAGCGATTCTCAAACAGTGGATGACGCTTGGAGTGAAATAAGTATtcttatatttatttctcagcaGCTCATATTAAGCATATCTCCACTATAAAACGGAAGTAGCCTACCCGGCATCATTGACAAACGGACTGGTGGGAAAGCCTCCATTTTCTATTTGAGTGTATACAGATGACGTCTTTATTCCCCCACCCATGTTCCTCTcatttgataatgggccattctaaagCTAAACAAATTGTACATATTTGTAAAGACAAGAttcaattgagaatagtctgatcattgaaaatatgatcacttaatgagagaacagcttttgcagcctgaggcaaggaaaaGAGTGCTTTTTTTgcgactttctcaaatcatcaatagcctaACCCCTTGATTTTCCCACATTTAGTTAGGTTATAGTTTAATTATAAAAtcgattaaattgtttttttcttctcctcaatctacacacaataacccataatgacaaagcaaaaacagtttttatacatttttgctaatttaaaaaatcgaactgaaatatcacattttcctaagtattcagaccctttactcagtactttgttgaagcacttttggcagcgattataacCTTGAGTtttctacaagcttggcacacctgtatttggggagtttctcagattcttctctgtagatccgctgaaactctgtcaggttggatggggagcgttgctgcatagtgaagccactcctgctttgccttggctgtgtgcttaaggctgttgtcctgttggaaggtgaaccgtcgtcccagtctgaggtcctgagcgctctggagaaggttttcatcaaggatctctctgtaccttgctccGTCCATCTtagcctcaatcctgactagtttcccagtccctgccactgaaaaacatccccacagcatgatgctgccacccccatgcttcaccatagggatggtgccaggtttcctccagacgtgacacttggcattcaggccaaagagttcaatcttggtttcatcagatgaCAGAATGTTGTTTGTCTTGATCTTTTGGCTAACTACAAGCaagctatcatgtgccttttactgagaagtggcttccgtctggatggtggagtgctgcagagatggttgtcattctggaaggttctctcatctccacagaggaactctagagctgtgtcagagtggccatcgggttcttagtcacctccctgaccaaggccattctcccccgatttctcagtttggccgggcggccagctctaggacgagtcttggtggttccaaacttcctccatttaaggatgatggaggccactgtcttcttggcTTTGGTACtgttgtggaaattcttacacagggacacttgAAATCAATCTTAATATCTTGAAGTCAATCTTTAAtaatctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtagtttgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaggtgtgcgttctctaattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttaatattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttaatattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484731 lncRNA downstream 3087 64990788 ~ 64991018 (-) True LOC110524335
TU484733 lncRNA downstream 65886 64927772 ~ 64928219 (-) True G427910
TU484732 lncRNA downstream 67359 64926270 ~ 64926746 (-) True G427909
TU484143 lncRNA downstream 213965 64779875 ~ 64780140 (-) True G427386
TU484113 lncRNA downstream 218644 64718887 ~ 64775461 (-) True G427360
TU484710 lncRNA upstream 13437 65010553 ~ 65011598 (-) True G427902
TU484776 lncRNA upstream 87143 65084259 ~ 65085437 (-) True G427950
TU484835 lncRNA upstream 184792 65181908 ~ 65183884 (-) True sema6bb
TU484862 lncRNA upstream 225281 65222397 ~ 65222600 (-) True G428035
TU484875 lncRNA upstream 254826 65251942 ~ 65252280 (-) True G428048
XM_036978086.1 mRNA downstream 3098 64983341 ~ 64991007 (-) False LOC110524335
XM_021603886.2 mRNA downstream 3101 64983341 ~ 64991004 (-) False LOC110524335
XM_021603887.2 mRNA downstream 3104 64983341 ~ 64991001 (-) False LOC110524335
XM_021603880.2 mRNA downstream 11421 64948066 ~ 64982684 (-) False LOC110524334
XM_036978087.1 mRNA upstream 14523 65011639 ~ 65022443 (-) False LOC110524336
XM_021603888.2 mRNA upstream 14523 65011639 ~ 65022842 (-) True LOC110524336
XM_036978089.1 mRNA upstream 33363 65030479 ~ 65048467 (-) False LOC110524339
XM_021603895.2 mRNA upstream 33363 65030479 ~ 65051482 (-) False LOC110524339
XM_021603896.2 mRNA upstream 33363 65030479 ~ 65051482 (-) True LOC110524339
TU484689 other downstream 83107 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 261133 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 288080 64701874 ~ 64706025 (-) False LOC110524330
TU484037 other downstream 425725 64566681 ~ 64568380 (-) True G427287
TU483573 other downstream 707746 64283968 ~ 64286359 (-) True LOC110522986
TU484709 other upstream 2592 64999708 ~ 65011598 (-) False G427902
TU484971 other upstream 373000 65370116 ~ 65382590 (-) False G428132
TU486620 other upstream 1789935 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2813489 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2814370 67811486 ~ 67818124 (-) True lrrc7

Expression Profile