RNA id: TU484971


Basic Information

Item Value
RNA id TU484971
length 5578
RNA type TUCP
GC content 0.43
exon number 3
gene id G428132
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65370116 ~ 65382590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttatacttaCTCATACAGtcctacattttaaaaacaaaaaatatctGGTGGTGTTTCTGAGCCAAAGGACTTGACTGCACTTCTGCAATTTCCTGCAGGACAGATCTACTACTTTGAACATTCTGGAACACAATTATTGTCCACGCTATCATTTCTCATACATCAGTGAAATGAGTAAAGTACTTCACTGTCAGTTATAATAAATCAGTTCTGCAGTGACAGAGAAATATTGCCAGATTTGGTCACTCATCATCATGGATCAAATGCTTTGTAGTAATGGCCTCAAAATGCAGACAATGATTATGTTGTGCTACAAACAAGCTTAATGACATTGTTAAAAGGGTCGGACCCtttagcctaaaatgacatacaggcagttagatttgggtagctcaggacctgaagcaaggatatgcatattcttgataccatttgaatggaaacactttagggttcaaactgtagaacccagttcctacattttaaTATAAAAATTGTTTTGAGCAAACAAAACTAAGCTATTTTCTCtttgggaccctcaggatgacaaagaggaagattactgaatgtaagtacattatttaccttcagaggtgaatgtatcaaatcaGTTGCTGTGATAAGTTTTGttttgcactctcctcaaacaatagcatggtcttttttcactgtaatagctactgataagttggacagtgcagttagattaacaagaattgaagctcTCTGTCCATATAAGAAATGTCTGTCTTGAGCATAAGTAACAAGGACATTTCCCAACGGGGagacaccgatcctgtagaggttaaagTATAACAGATTGAAATTGTAGTGGATGTTTTCATAACATCAAGCGCTGATTCTGAGCTGGTTAAGTTGATTCATTTACATACAATTGCAATGATCCAACAGGGGCTCCTAAGTGGCGCAGCacatctaaggcactgcatctcagtgctagaggcatcactagacaccctggttccattccagactatatcacaaccggccatgattgggagtcccatagggcggcgcacaattagcccagtgtcatctgggtttggccatcattgtaaatgagaatttgttcttaactggcttgcctataTAAATACAGGTTTATTTTAAAGAAATCTTGTTTGGTCAATTCCATTGATAAAAAATAGCTTGATAACCCTGTTGGTAACATTCAAATTGCTCACCTTTTTAAATGCTGGGGTAGTTCGAGTAGTCAAGGTAACTATCAACCTGCGAAACATAATTGCAAAGAAGACAAAATCAGCCAAACTGAAGGACAAACCAACTCTGTTCCCTTGGCCTAAAACAGGGTATACTCATCAGGTAACCCCGGTGCCACATCTCTGCCCACTTTAAAGCCAGTTTACTGCATGCCCTTAAAACAGTAACATCACAATAGGGAATAAAACCTACAGCAAAGTATATATCTTTTTCTCACAGACAGGAGTCTAGTCCATCATACGCGTGCCCTTCTTACATGGTATCACAGGCACTGCACCATCTCCACTCAGATACTTTATATAGTGGGAACCTAAAGATCCAAGTGCCTAAATTCCAAATGAGAACCAAGAGGACTCATCTCTTGCCACAGGGGCTTTGAGCTCCTGGCTTGGCTCAGCAACAGGCAACCTTGGTGTTTGCATGCCAAGACTGAGCCATTTTAGACCTTTCCTTCACTAAGCCGTTCTTTAACTGGCAACACAACCCAGGCTAATGCTCCAATCACAGGTCCATCTAAATCCAGACCAGGCACCACATCCCAATAGGGATTTTTCTCTCTCAATCATATCACAAATCACCTTTTACCAGTCGGATGTAGACACACACAAAATTGTTTTATTACATTTTCGTCTGagtaaaaaaattatatatataaatatatatgcaaAAAAAGGTGAGATGATTAAATATGCTCATATTTGCATAAGACAAATACATTTTTCTGGACAATGGACAAAGTCCGAATAAATATTTTTGTTAAAGATACCCACGACCGGACTTGGCCAGAGAAGATTGTGGATAAATACTTTATCCATCTTTCTATCTGTAAAATAAAGACATGTAGATAAATGTATTTTTGGAACATTCTTCCAAATTAAAATGTTAActagatttttgttttttttacgacAGCATATAAACAATTCCCTCTGGGCATGTCTGGAGAATATGCACTATAtttacacaaaagtatgtggacaccacttcaaattagtggattcggctatttcagccacacctgttgcagACAGgcgtataaaatcaagcacatagccatgcaatctccatagacaaacaatccgtactgaagagctcggtgactttcaacgtggcacccctcgtcaaatttctgccctggtcaactgtaagtgctgtcattgtgaagtggaaatgtctaggagcaacaactgctcagccgtgaagtggtaggccacacaagctcacagaacaggaccgccaagtgctgaagctcataaaaatcgtctgtcctcggttgcgaaACTCAATACTGaattctaaactgcctctggaagcaacttcagcacaactgttagtcgggagcttcatgaaatgggtttccatgggcgAGCAACcaaacacaagcctaagatcaccatgtgcaatccCAAGCGTCGGccagagtggtgtaaagctcgccgccattggaagcgcgttctctggcgtgatgaatcatgcttcaccatctggctgtccgatggacgaatctaagtttgacagatgccaggagaacactacttgCCCCAGTGTATAGTGCCAACAGGAATGGTTGGTGGATtaataattgtctggggctgtttttcatgtttcccagtgaagggaaattaatgctacagcatacaattatattctagacaattctgtgcttccaactttgtggcaacagtttggggaagaccctttcctgtttctgcatgacaatgcccctgtgcacaatgcgaggtccatacagaaatggtttgtcaagatcagggtggaagaacttcactgcaaagagccctgacctcaaccccatccaacacctttgggatgaattggaatgccaactgcgggccaggcctaatcgcccaacatcagtgtctgaCCTCACAATGgtagcaagtccctgcagcaatgttccaacatctagtggaaagccttcccagacgagtggaggctgttattgcagcaaagaggggaccaactccatattaatgcacatgattttggaatgagatattcgcAGAGCAGGTACCCACATATCTTTGGTCATGTAATgtatctaaggataaccacaaAACATTTGGTGAATGCAGATGCTTCTGAAGCTGAGAAATTTGTTGGCGTGTGGGAAAAGTGACTTTTGGGAAATGACAGTTAAAGGCAAATACACTGAAGACTACCAAACACCAAAAGTCTATTTAAACCCATTGAACAGCCCTTGAAAGTCCAGTTTGTAAATCTCTTATGAAATGGGCTTAGAAATGAATGATGCGTGTTCATTTTAGTGGTTAAAATTAATAACAATTTTGATGACAGTAGTATAACAAACTAAAGAAATTATAAGTTTTCAGCAAGTTTGAAATGGTTTACTTTgtgaaaatacaaataataaatgGACCAAAAATACCAACAAATCTCAATCagtagatgcaaaaatgtaatttcaaCCTGTGGTGCCTGGCGTCAAGTCCCGATGTTTTCCTGTTCATATAAGAGAGCTCATTCAATTCAGACTTTCTCTCAAAAGGGCCTCGTTGTTTTGCCAGGTGTCACACGTGATGTTTTTCAGTATCTGCTTTTTTCCACACAACTCTTTTTCAATGACATTCGCTCTGAAACGTTTGATTCACCTAAAAATGCAAAACTGCCACTAATTATTTGGAACCAAACTAGTGTGACCAATCCTGAAAACAACCACAGGGACACGAAGGCCCTTGGCCGAGGATTGAGACATGTCCAAATTACTGGTACTACGGGTTGTGTTTGTCTGTCTATAGATTCACCGAATGTGGGCAGTCAGGAGGAACAGGAAAGCAACCTAGAATGACACTTTTGAATAAATGTCATCCAGAGTGATTTTAGACCTATGACTAAATTCCACCCCCTGTTCAAAGACACAGGAATTACCTGTGGGTGAAAGAAAATACAAGGAAAAGAAAGCAGTGCCACGGCAGTTTTCTTTAGGGTAGTTATGAAAACATtactacacacacatatacaaattCTTGGACTAATTGCCAACCAGTTCTGTTATCATTCAGCATATATCAGTGGTCTGCTGGTGGTTAGGGAACAAGGTGGTTCACTGTTGGCTTTATGGAACAGAAGAGGGCGTTCAAGGAGAACACTACATTATGTCCTGCCTGGACTGGCAGAACATGCTTTATTCTCAGTAGCaaacctgcagagagagagagatcaagctAAACTACACtcctcaaaaaaaataaagggaacacttaaacaacacaatgtaactccaagtcaatcactcttctgtgaaatcaaactgtccacttaggaagcaacactgacaataaatttcacatgctgttgtgcaaatggaatagacaacaggtggaaattacaggcaattagcaagacacccccaataaaggagtggttctgcaggtggggaccacagaccacttctccgttcctatgcttcctggctgatgttttggtcacttttgaatgctggcggtgctttcactctagtggtagcatgagatggagtctacaacccacacaagtggctcaggtagtgcagctcatccaggatggcacaacaatgcgagctgtggcaagaaggtttgctgtatctgtcagcgtagtgtccagaacatggaggcgctaccaggagacaggccagtacatcaggagacatggaggaggccgtaggagggcaacaacccagcagcaggaccgctacctccgcctttgtgcaaggaggagcaggaggagcactgccagagccctgctaaatgacctccagcaggccacaaatgtgcatgtgtctgctcaaataTGAGGTCCCGACGTCCACAGGAGGGGgtagtgcttacagcccaacaccgtacaggacgtttggcatttgccagagaacaccaagattggcaaattcgccactggcgccctgtgctcttcacagatgaaagcaggttcacaatgagcacatgtgacagacgtgacagagtctggagacgccgtggagaacgttctgctgcctgcaacatcctccagcatgaccggtttggcagtgggtcagtcatggtgtggggcggcatttctttggtgggccgcacagccctccatgtgctcgccagaggtagcctgactgccattaagtaccaagatgagatcctcagaccccttgtgagaccatatgctggtgcggttggccctgggttcctcctaatgcaagacaatgctagggacatcatgtctcgctccatccaccaagttgcaccacagactgtccaggagttggcggatgctttagtccaggtctgggaggagatccctcaggagaccatccgccacctcatcaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484959 lncRNA downstream 359 65369516 ~ 65369757 (-) True G428131
TU484936 lncRNA downstream 38678 65331224 ~ 65331438 (-) True G428108
TU484928 lncRNA downstream 46098 65323787 ~ 65324018 (-) True G428100
TU484916 lncRNA downstream 60137 65309746 ~ 65309979 (-) True G428088
TU484910 lncRNA downstream 66796 65303063 ~ 65303320 (-) True G428082
TU485021 lncRNA upstream 52732 65435322 ~ 65436230 (-) True G428165
TU485125 lncRNA upstream 215741 65598331 ~ 65598560 (-) True G428268
TU485126 lncRNA upstream 216017 65598607 ~ 65598850 (-) True G428269
TU485129 lncRNA upstream 219790 65602380 ~ 65602588 (-) True G428272
TU485130 lncRNA upstream 220254 65602844 ~ 65603144 (-) True G428273
XM_036978092.1 mRNA downstream 36942 65181687 ~ 65333174 (-) False sema6bb
XM_036978093.1 mRNA downstream 36942 65181687 ~ 65333174 (-) False sema6bb
XM_036978094.1 mRNA downstream 36942 65181687 ~ 65333174 (-) False sema6bb
NM_001199827.1 mRNA downstream 232156 65121824 ~ 65137960 (-) True rorca
XM_021603905.2 mRNA downstream 260737 65091180 ~ 65109379 (-) False LOC110524345
XM_021603920.2 mRNA upstream 25232 65407822 ~ 65426274 (-) False rgl1
XM_021603919.2 mRNA upstream 25232 65407822 ~ 65455011 (-) True rgl1
XM_021603923.2 mRNA upstream 81793 65464383 ~ 65507042 (-) True colgalt2
XM_021603925.2 mRNA upstream 137717 65520307 ~ 65550031 (-) False zgc:92140
XM_021603924.2 mRNA upstream 137717 65520307 ~ 65550066 (-) False zgc:92140
TU484709 other downstream 358518 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 459118 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 637144 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 664091 64701874 ~ 64706025 (-) False LOC110524330
TU484037 other downstream 801736 64566681 ~ 64568380 (-) True G427287
TU486620 other upstream 1404461 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2428015 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2428896 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2957614 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 3317231 68699821 ~ 68707448 (-) True G432310

Expression Profile