RNA id: TU484533


Basic Information

Item Value
RNA id TU484533
length 1630
RNA type TUCP
GC content 0.47
exon number 2
gene id G427747
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65453856 ~ 65521380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccctgtctgtctgccatctgccttcACTACTGTACACAATCACATTGGACTGTTCCTTCTAGTACACTAAAGACTTTGGACATTGAATGGTCTGCCATCGTCTACTTTTCTGTCAATTTCCTGAATCCCTTTGTACAGTGTCTCTCTCACACCTCAGCCCAACAATGAAACTACCAAAACATATCTCCTTGAATTTGGCCCTGCAGACCTGAACACAGCATCACTGAGAGATTGAACACAGAGACaactcagacagagagacagagcaggaaaGTGTATAGACCCACTTCAGATGAGAAGACCAGTCCATCGTACTGGAAGGACACAGCAGAAAGTGTGAAACAATGTTTCCCTAACATTAAAGACTATCCACcatagacagagacacacagagaagggtaCATGAaagacagctacacacacacacacacacacacgcacgcacgcacgcacgcacacacacacacacacatatatatatatatacacacacacgagtCTATCTGCATTGGTCTGTCTGTATGAGCGTGTGTCTGTATGAGCGTGTGTCTATATGTACGAGTGTGCACTTCTGTGTCTGCATCTATGCATATGAAGTTGAGTGTGTTTCACATAGCCAGGGTCTGGTATATTAGCGTTGAGGGTATATTTAAGAGGACAGGTTATGTAGTGACACAGGAACTCTGACCTATAGAGCTGTAGCCTGCAGGAGGTGATGCACTAGGATAGAagccaaaaacaaaacaaacaaaaaaacattaaaaaaaactaaaaataatGAACTGGATCAACATAATAAAAAAGTCCTTCAAAAAGGCAGGAGCTCAGAGTTTCAAAATAAGCCACTCACTGACTCTTCTTTCTCTTATTAAAATATCTAGGTTTTTCTttactccccctcccctccccctaccctctcGCAGGTCCTCTGGCCCACTGCAGCAGCGAGCCTCCGTTGTCTGATGGGGGTTAAGGAAGTGCCTCCCCCTCCCCagcacctctctttctctatccacaTCTCTGCTCCTCACAAGCAAAGCACAATAGTCAGGGCCATGGAGGATGGAAACCAGGAGGGTGTCTCCCAGACTCCCATAATGCTCATTCTTCCTCTGTTCGTCCTCCTTCTCCATGTTGTAGTCATGGGGTGGTATACACAAAGCTGGACCAGGGACCACAGTACAGTTCACTGGGGTGGTAGttggggtagaggggagggtccCTCCATAGTCCTGCAGGGCAGTGAGTCCACATGTCGGTTTGCATGTCCGTCTCCATGTGCGTCTCTCCATAGTCCTGCAGGGCAGTGAGTCcacatgtctgtctgtatgtctcctcGTTCGTCTCTCCCTCCAGTAATCCACTCAGGGGCCCAATGGGACGACAGCCAAGAGGGGGGCAACAGTCTTTGAGAATAGCTATCCATCTCGCTTTCACACACAAAAAACCTACATGctcacagacacatacagaatCACATACAAAGGCAGTggaacaaacatacacacactgattcAGACGAACATGCACTCGCACACACTCTGGGAGGCTCTCTGTTGGGGGTTGAGTCAGGCCTTGTTTGCTATGTCCCATCCTCTGCCTCTTCTTCCTCTGAACAGTAGTCTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484530 lncRNA upstream 1215 65451281 ~ 65452641 (+) True G427744
TU484522 lncRNA upstream 17562 65435451 ~ 65436294 (+) True G427736
TU484481 lncRNA upstream 103880 65349497 ~ 65349976 (+) True G427698
TU484470 lncRNA upstream 120900 65332162 ~ 65332956 (+) True G427687
TU484438 lncRNA upstream 154385 65299264 ~ 65299471 (+) True G427659
TU484624 lncRNA downstream 74394 65595774 ~ 65596022 (+) True G427829
TU484635 lncRNA downstream 85130 65606510 ~ 65643082 (+) True G427838
TU484656 lncRNA downstream 132296 65653676 ~ 65654077 (+) True G427859
TU484657 lncRNA downstream 135391 65656771 ~ 65657094 (+) True G427860
TU484625 lncRNA downstream 137574 65658954 ~ 65661439 (+) True notch2
XM_021603914.2 mRNA upstream 57680 65388061 ~ 65396176 (+) False abhd17ab
XM_021603918.2 mRNA upstream 57680 65388062 ~ 65396176 (+) False abhd17ab
XM_021603915.2 mRNA upstream 57680 65388526 ~ 65396176 (+) False abhd17ab
XM_021603916.2 mRNA upstream 57680 65388526 ~ 65396176 (+) False abhd17ab
XM_036978099.1 mRNA upstream 57680 65388526 ~ 65396176 (+) False abhd17ab
XM_021603932.2 mRNA downstream 50048 65571428 ~ 65581138 (+) False npl
XM_021603933.2 mRNA downstream 50057 65571437 ~ 65581138 (+) True npl
XM_021603931.2 mRNA downstream 60042 65581422 ~ 65587007 (+) True LOC110524356
XM_021601272.2 mRNA downstream 65756 65587136 ~ 65590748 (+) False sec22bb
NM_001165250.1 mRNA downstream 65801 65587181 ~ 65590747 (+) True sec22bb
TU484227 other upstream 425154 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other upstream 425154 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other upstream 425154 65024715 ~ 65028702 (+) False LOC110524338
TU484230 other upstream 425154 65024715 ~ 65028702 (+) True LOC110524338
TU484247 other upstream 456718 64992101 ~ 64997138 (+) True G427476
TU485654 other downstream 620699 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 1460569 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1939349 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1939349 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 2581799 68103179 ~ 68103534 (+) True G430796

Expression Profile