RNA id: TU485056


Basic Information

Item Value
RNA id TU485056
length 538
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G428200
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65648293 ~ 65648830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagaggaaagagagaggaaatggagaggggaaagagaggaaagaccATCAGTTGAGGTCAGAGTTGTAGTTGTACATTATGTAAAACCAATGTGCCAGAAAacaagagagcgaaagagatagATAAAACTAGAAATAATCTTCTGGTATCTGCTTACCATGTGTACCAGGTGGGCAGGCGCAGGAGAAGCGGTTGATGAGGTTGATGCAGGTTCCTCCATGACGACAAGGGTTAGAGTGACACTCATCTACGTCATACTCACAGTTCACCCCCTGGTAGCCAGCCTTGCACTGGAACAGAGACACATTGTTAGATGttctcactcacacacccacacacccacacacccacacacacaaaacttaCCATACACTCATATGTGCCCTGGTAGTCCATGCAGGTGGCTCCGTTGCGGCAGGGGTTAGACTGGCACTCGTCCACAGTCTTGTCACAGTAGCTGCCTGTGTAGCCAGGCTGGCACTGACACTGGTGGGCATTACCGACGTTCACACAGCGACCCATGTGCttacacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485051 lncRNA downstream 1738 65646338 ~ 65646555 (-) True G428195
TU485052 lncRNA downstream 4479 65643592 ~ 65643814 (-) True G428196
TU485130 lncRNA downstream 45149 65602844 ~ 65603144 (-) True G428273
TU485129 lncRNA downstream 45705 65602380 ~ 65602588 (-) True G428272
TU485126 lncRNA downstream 49443 65598607 ~ 65598850 (-) True G428269
TU485050 lncRNA upstream 1297 65650127 ~ 65650644 (-) True G428194
TU485044 lncRNA upstream 2471 65651301 ~ 65651627 (-) True G428188
TU485223 lncRNA upstream 81871 65730701 ~ 65730985 (-) True G428359
TU485233 lncRNA upstream 94079 65742909 ~ 65743117 (-) True G428369
TU485235 lncRNA upstream 94892 65743722 ~ 65744226 (-) True G428371
XM_021603928.2 mRNA downstream 77120 65551345 ~ 65571173 (-) True LOC110524355
XM_021603929.2 mRNA downstream 77121 65551345 ~ 65571172 (-) False LOC110524355
XM_021603930.2 mRNA downstream 77122 65551345 ~ 65571171 (-) False LOC110524355
XM_021603927.2 mRNA downstream 98223 65520307 ~ 65550070 (-) True zgc:92140
XM_021603924.2 mRNA downstream 98227 65520307 ~ 65550066 (-) False zgc:92140
XM_021603936.2 mRNA upstream 29284 65678114 ~ 65681972 (-) True fam78bb
XM_036978104.1 mRNA upstream 215788 65864618 ~ 65959260 (-) False trabd2b
XM_021603941.2 mRNA upstream 215789 65864619 ~ 65959259 (-) True trabd2b
XM_036978108.1 mRNA upstream 397033 66045863 ~ 66050179 (-) False LOC110524366
XM_036978107.1 mRNA upstream 397033 66045863 ~ 66050182 (-) False LOC110524366
TU484971 other downstream 265703 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 636695 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 737295 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 915321 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 942268 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 1138221 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2161775 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2162656 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2691374 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 3050991 68699821 ~ 68707448 (-) True G432310

Expression Profile