RNA id: TU485235


Basic Information

Item Value
RNA id TU485235
length 505
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G428371
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65743722 ~ 65744226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacagtcccagtaacagctacagcccctcacagtcccagtgtacagctacagcccctacagtccaggtaacagctacagcccctcacagtcccagtaacagctgcagcccctacagtcccagtggacagctacagcccctacagtcccagtaacagctacagcccctacagtcccagtaacagctacagcccctcacagtcccagtgtacagctacagccccttacagtcccagtaacagctacagcccctcacagtcccagtaacagctacagcccctacagtcccagtgtacagctacagcccctacagtcccagtaacagctacagcccctacagtcccagtaacagctacagcccctacagtcccagtgtacagctacagcccctacagtcccagtaacagctataGCCCCTCACAGtgtcagtaacagctacagcccctcacagtcccagtgtacagctacagccccttacagtctcagtgtacagctacagcccatTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485233 lncRNA downstream 605 65742909 ~ 65743117 (-) True G428369
TU485223 lncRNA downstream 12737 65730701 ~ 65730985 (-) True G428359
TU485044 lncRNA downstream 92095 65651301 ~ 65651627 (-) True G428188
TU485050 lncRNA downstream 93078 65650127 ~ 65650644 (-) True G428194
TU485056 lncRNA downstream 94892 65648293 ~ 65648830 (-) True G428200
TU485237 lncRNA upstream 7914 65752140 ~ 65752521 (-) True G428373
TU485240 lncRNA upstream 23156 65767382 ~ 65767743 (-) True G428376
TU485244 lncRNA upstream 26765 65770991 ~ 65771332 (-) True G428380
TU485245 lncRNA upstream 33911 65778137 ~ 65778374 (-) True G428381
TU485285 lncRNA upstream 81207 65825433 ~ 65825723 (-) True G428419
XM_021603936.2 mRNA downstream 61750 65678114 ~ 65681972 (-) True fam78bb
XM_021603928.2 mRNA downstream 172549 65551345 ~ 65571173 (-) True LOC110524355
XM_021603929.2 mRNA downstream 172550 65551345 ~ 65571172 (-) False LOC110524355
XM_021603930.2 mRNA downstream 172551 65551345 ~ 65571171 (-) False LOC110524355
XM_021603927.2 mRNA downstream 193652 65520307 ~ 65550070 (-) True zgc:92140
XM_036978104.1 mRNA upstream 120392 65864618 ~ 65959260 (-) False trabd2b
XM_021603941.2 mRNA upstream 120393 65864619 ~ 65959259 (-) True trabd2b
XM_036978108.1 mRNA upstream 301637 66045863 ~ 66050179 (-) False LOC110524366
XM_036978107.1 mRNA upstream 301637 66045863 ~ 66050182 (-) False LOC110524366
XM_036978105.1 mRNA upstream 301637 66045863 ~ 66050187 (-) False LOC110524366
TU484971 other downstream 361132 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 732124 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 832724 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1010750 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1037697 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 1042825 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2066379 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2067260 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2595978 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2955595 68699821 ~ 68707448 (-) True G432310

Expression Profile