RNA id: TU485252


Basic Information

Item Value
RNA id TU485252
length 256
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G428388
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65784305 ~ 65784560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattgaagatttatgttaaaactcacatcgtgagtttggatttgtttaccaaacgcgctaacaaaaggaggtatttggacataaatgatggactttatcgaacaaaacaaacatttattgtggaactgggattcctgggagtgcattctgatgaagatcatcaaaggttagtgattaattgtatctctatttctgctttttgtgactcctctctttggctggaaaatggctgtgtgggtttttgtgactaggctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485249 lncRNA upstream 1647 65782447 ~ 65782658 (+) True G428385
TU485246 lncRNA upstream 4020 65779973 ~ 65780285 (+) True G428382
TU485243 lncRNA upstream 14032 65769859 ~ 65770273 (+) True G428379
TU485239 lncRNA upstream 21369 65762686 ~ 65762936 (+) True G428375
TU485238 lncRNA upstream 27297 65756732 ~ 65757008 (+) True G428374
TU485259 lncRNA downstream 3813 65788373 ~ 65798494 (+) True G428393
TU485286 lncRNA downstream 41478 65826038 ~ 65826288 (+) True G428420
TU485315 lncRNA downstream 66065 65850625 ~ 65850861 (+) True G428449
TU485440 lncRNA downstream 186890 65971450 ~ 65971682 (+) True G428570
TU485486 lncRNA downstream 198691 65983251 ~ 66034123 (+) False G428576
XM_021603939.2 mRNA upstream 68438 65713466 ~ 65715867 (+) True foxd2
XM_021603937.2 mRNA upstream 78876 65703567 ~ 65705429 (+) True foxe3
XM_036978103.1 mRNA upstream 106464 65661962 ~ 65677841 (+) True slc35a3a
XM_036978102.1 mRNA upstream 122856 65604119 ~ 65661449 (+) False notch2
NM_001165250.1 mRNA upstream 193558 65587181 ~ 65590747 (+) True sec22bb
XM_021603948.2 mRNA downstream 269404 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA downstream 269404 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA downstream 269404 66053964 ~ 66058160 (+) False znf692
XM_036978111.1 mRNA downstream 274534 66059094 ~ 66106566 (+) True fcho1
XM_021603954.2 mRNA downstream 399103 66183663 ~ 66210856 (+) False acsbg2
TU484533 other upstream 262925 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 755603 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 357519 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 1197389 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1676169 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1676169 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 2318619 68103179 ~ 68103534 (+) True G430796

Expression Profile