RNA id: TU485376



Basic Information


Item Value
RNA id TU485376
length 306
lncRNA type intronic
GC content 0.49
exon number 2
gene id G428509
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65880199 ~ 65882002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTGGGAATACTCTACACGACCCTGATGAAGAGCTGGTATGGGGTGGACTGGGAGGTATAGACTCTGATGTAGGGCTAGTATAGGGTGGACTAGGAGGTATAGACTCTGATGTAGGACTGGTGTAGGGTGGACAAGGAGGTATAGACTCTGATGTAGGGCTGGTATAGGGTGGACTAGGAGGTATAGACTCTGATGTATTGCTTGAATAGGGTGGACTAGGAGGTATAGACTCTGATGTAGGACTGGTGTTGGGTGAACAAGGAGGTATAGACTCTGATGTAGGGCTGGTATAGGGTGGACAAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU485285 lncRNA downstream 55372 65825433 ~ 65825723 (-) True G428419
TU485245 lncRNA downstream 102721 65778137 ~ 65778374 (-) True G428381
TU485244 lncRNA downstream 109763 65770991 ~ 65771332 (-) True G428380
TU485240 lncRNA downstream 113352 65767382 ~ 65767743 (-) True G428376
TU485237 lncRNA downstream 128574 65752140 ~ 65752521 (-) True G428373
TU485521 lncRNA upstream 117864 65999866 ~ 66011478 (-) True G428589
TU485519 lncRNA upstream 126282 66008284 ~ 66024739 (-) True G428588
TU485545 lncRNA upstream 143893 66025895 ~ 66036340 (-) True G428610
TU485551 lncRNA upstream 156190 66038192 ~ 66038559 (-) True G428615
TU485556 lncRNA upstream 157749 66039751 ~ 66039963 (-) True G428620
XM_021603936.2 mRNA downstream 199123 65678114 ~ 65681972 (-) True fam78bb
XM_021603928.2 mRNA downstream 309922 65551345 ~ 65571173 (-) True LOC110524355
XM_021603929.2 mRNA downstream 309923 65551345 ~ 65571172 (-) False LOC110524355
XM_021603930.2 mRNA downstream 309924 65551345 ~ 65571171 (-) False LOC110524355
XM_021603927.2 mRNA downstream 331025 65520307 ~ 65550070 (-) True zgc:92140
XM_036978108.1 mRNA upstream 163861 66045863 ~ 66050179 (-) False LOC110524366
XM_036978107.1 mRNA upstream 163861 66045863 ~ 66050182 (-) False LOC110524366
XM_036978105.1 mRNA upstream 163861 66045863 ~ 66050187 (-) False LOC110524366
XM_036978106.1 mRNA upstream 163861 66045863 ~ 66050187 (-) False LOC110524366
XM_021603944.2 mRNA upstream 163861 66045863 ~ 66050191 (-) False LOC110524366
TU484971 other downstream 498505 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 869497 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 970097 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1148123 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1175070 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 905049 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1928603 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1929484 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2458202 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2817819 68699821 ~ 68707448 (-) True G432310