RNA id: TU485440


Basic Information

Item Value
RNA id TU485440
length 233
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G428570
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65971450 ~ 65971682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaaaatgcagcgtggttatttcgatacatctttaatcaaagataaacacgaacaatacaaaaacaataaacataccgtgaaaacctaaacttatctggtgcaaacaaacacagagacaggaacaatcacccacaaaacactcaaagaatatggctgcctaaatatggttcccaatcagagacaacgataaacacctgcctctgattgagaaccacttcaggcaaccatagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485315 lncRNA upstream 120589 65850625 ~ 65850861 (+) True G428449
TU485286 lncRNA upstream 145162 65826038 ~ 65826288 (+) True G428420
TU485259 lncRNA upstream 172956 65788373 ~ 65798494 (+) True G428393
TU485252 lncRNA upstream 186890 65784305 ~ 65784560 (+) True G428388
TU485249 lncRNA upstream 188792 65782447 ~ 65782658 (+) True G428385
TU485486 lncRNA downstream 11569 65983251 ~ 66034123 (+) False G428576
TU485460 lncRNA downstream 24402 65996084 ~ 66027970 (+) False G428576
TU485498 lncRNA downstream 24402 65996084 ~ 66011478 (+) False G428576
TU485502 lncRNA downstream 29380 66001062 ~ 66008557 (+) False G428576
TU485493 lncRNA downstream 40884 66012566 ~ 66030470 (+) False G428576
XM_021603939.2 mRNA upstream 255583 65713466 ~ 65715867 (+) True foxd2
XM_021603937.2 mRNA upstream 266021 65703567 ~ 65705429 (+) True foxe3
XM_036978103.1 mRNA upstream 293609 65661962 ~ 65677841 (+) True slc35a3a
XM_036978102.1 mRNA upstream 310001 65604119 ~ 65661449 (+) False notch2
NM_001165250.1 mRNA upstream 380703 65587181 ~ 65590747 (+) True sec22bb
XM_021603948.2 mRNA downstream 82282 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA downstream 82282 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA downstream 82282 66053964 ~ 66058160 (+) False znf692
XM_036978111.1 mRNA downstream 87412 66059094 ~ 66106566 (+) True fcho1
XM_021603954.2 mRNA downstream 211981 66183663 ~ 66210856 (+) False acsbg2
TU484533 other upstream 450070 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 942748 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 170397 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 1010267 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1489047 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1489047 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 2131497 68103179 ~ 68103534 (+) True G430796

Expression Profile