RNA id: TU485486


Basic Information

Item Value
RNA id TU485486
length 1159
lncRNA type inter_gene
GC content 0.29
exon number 3
gene id G428576
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65983251 ~ 66034123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatgcagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtgctaaactatacagaattgtataaagaaggtcataccaatgatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggataattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaatggtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattatgCTAAAcaatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattttactaaactatacagaattgtttaaagaaggtcataccatggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatgcagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactattcagaattgtataaagaaggtcataccaaggatcatttttctgtttgaaatagtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattatactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaattatacagaattgtataaagaaagtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485440 lncRNA upstream 11569 65971450 ~ 65971682 (+) True G428570
TU485315 lncRNA upstream 132390 65850625 ~ 65850861 (+) True G428449
TU485286 lncRNA upstream 156963 65826038 ~ 65826288 (+) True G428420
TU485259 lncRNA upstream 184757 65788373 ~ 65798494 (+) True G428393
TU485252 lncRNA upstream 198691 65784305 ~ 65784560 (+) True G428388
TU485561 lncRNA downstream 10404 66044527 ~ 66045201 (+) True G428625
TU485562 lncRNA downstream 17050 66051173 ~ 66051372 (+) True G428626
TU485569 lncRNA downstream 22272 66056395 ~ 66058138 (+) True znf692
TU485594 lncRNA downstream 73010 66107133 ~ 66108885 (+) True G428637
TU485626 lncRNA downstream 76115 66110238 ~ 66110481 (+) True G428669
XM_021603939.2 mRNA upstream 267384 65713466 ~ 65715867 (+) True foxd2
XM_021603937.2 mRNA upstream 277822 65703567 ~ 65705429 (+) True foxe3
XM_036978103.1 mRNA upstream 305410 65661962 ~ 65677841 (+) True slc35a3a
XM_036978102.1 mRNA upstream 321802 65604119 ~ 65661449 (+) False notch2
NM_001165250.1 mRNA upstream 392504 65587181 ~ 65590747 (+) True sec22bb
XM_021603948.2 mRNA downstream 19841 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA downstream 19841 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA downstream 19841 66053964 ~ 66058160 (+) False znf692
XM_036978111.1 mRNA downstream 24971 66059094 ~ 66106566 (+) True fcho1
XM_021603954.2 mRNA downstream 149540 66183663 ~ 66210856 (+) False acsbg2
TU484533 other upstream 461871 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 954549 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 107956 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 947826 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1426606 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1426606 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 2069056 68103179 ~ 68103534 (+) True G430796

Expression Profile