RNA id: TU485479


Basic Information

Item Value
RNA id TU485479
length 309
lncRNA type inter_gene
GC content 0.31
exon number 3
gene id G428576
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65983251 ~ 66034123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actaaactatacagaattgtttaaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcattccgaggatcattttgctgtttgaaattgtactgaactatacagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatgcagaattgtataaagaaggtcataccaaggatcattttgctgtttgaaattgtactaaactatacagaattgtataaagaaggtcataccaaggatcattttgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485498 lncRNA upstream 12353 65996084 ~ 66011478 (+) False G428576
TU485502 lncRNA upstream 15274 66001062 ~ 66008557 (+) False G428576
TU485440 lncRNA upstream 52149 65971450 ~ 65971682 (+) True G428570
TU485315 lncRNA upstream 172970 65850625 ~ 65850861 (+) True G428449
TU485286 lncRNA upstream 197543 65826038 ~ 65826288 (+) True G428420
TU485561 lncRNA downstream 14057 66044527 ~ 66045201 (+) True G428625
TU485562 lncRNA downstream 20703 66051173 ~ 66051372 (+) True G428626
TU485569 lncRNA downstream 25925 66056395 ~ 66058138 (+) True znf692
TU485594 lncRNA downstream 76663 66107133 ~ 66108885 (+) True G428637
TU485626 lncRNA downstream 79768 66110238 ~ 66110481 (+) True G428669
XM_021603939.2 mRNA upstream 307964 65713466 ~ 65715867 (+) True foxd2
XM_021603937.2 mRNA upstream 318402 65703567 ~ 65705429 (+) True foxe3
XM_036978103.1 mRNA upstream 345990 65661962 ~ 65677841 (+) True slc35a3a
XM_036978102.1 mRNA upstream 362382 65604119 ~ 65661449 (+) False notch2
NM_001165250.1 mRNA upstream 433084 65587181 ~ 65590747 (+) True sec22bb
XM_021603948.2 mRNA downstream 23494 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA downstream 23494 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA downstream 23494 66053964 ~ 66058160 (+) False znf692
XM_036978111.1 mRNA downstream 28624 66059094 ~ 66106566 (+) True fcho1
XM_021603954.2 mRNA downstream 153193 66183663 ~ 66210856 (+) False acsbg2
TU484533 other upstream 502451 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 995129 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 111609 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 951479 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1430259 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1430259 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 2072709 68103179 ~ 68103534 (+) True G430796