RNA id: TU485519


Basic Information

Item Value
RNA id TU485519
length 2131
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G428588
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66008284 ~ 66024739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtataatttcaaacagcaaaatgatccttggtatgaccttctttatacaattatgtatagtttagtacaatttcaaacagcaaaattatccttggtatgaccttctttatacaatgctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattatgtatagtttagtacattttcaaacagcaaaatgatccttggtatgagcttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaattatccttgtatgaccttctttaaacaattctgtatagtttagtacaatttcaaagagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtataatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagttcagtacaatttcaaacagcaaaatgatcctcggaatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaattatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttactacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgcatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttactacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatcattggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagcacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacatcaaaattatccttggtatgaccttctttaaacaattctgtatagtttactacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttgaaacatcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaatgctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485377 lncRNA downstream 126282 65880199 ~ 65882002 (-) False G428509
TU485376 lncRNA downstream 126282 65881095 ~ 65882002 (-) False G428509
TU485378 lncRNA downstream 126282 65881095 ~ 65882002 (-) False G428509
TU485379 lncRNA downstream 126282 65881095 ~ 65882002 (-) True G428509
TU485285 lncRNA downstream 182561 65825433 ~ 65825723 (-) True G428419
TU485545 lncRNA upstream 1156 66025895 ~ 66036340 (-) True G428610
TU485551 lncRNA upstream 13453 66038192 ~ 66038559 (-) True G428615
TU485556 lncRNA upstream 15012 66039751 ~ 66039963 (-) True G428620
TU485558 lncRNA upstream 17872 66042611 ~ 66042823 (-) True G428622
TU485586 lncRNA upstream 29296 66054035 ~ 66054742 (-) True G428633
XM_036978104.1 mRNA downstream 49024 65864618 ~ 65959260 (-) False trabd2b
XM_021603941.2 mRNA downstream 49025 65864619 ~ 65959259 (-) True trabd2b
XM_021603936.2 mRNA downstream 326312 65678114 ~ 65681972 (-) True fam78bb
XM_021603928.2 mRNA downstream 437111 65551345 ~ 65571173 (-) True LOC110524355
XM_021603929.2 mRNA downstream 437112 65551345 ~ 65571172 (-) False LOC110524355
XM_036978108.1 mRNA upstream 21124 66045863 ~ 66050179 (-) False LOC110524366
XM_036978107.1 mRNA upstream 21124 66045863 ~ 66050182 (-) False LOC110524366
XM_036978105.1 mRNA upstream 21124 66045863 ~ 66050187 (-) False LOC110524366
XM_036978106.1 mRNA upstream 21124 66045863 ~ 66050187 (-) False LOC110524366
XM_021603944.2 mRNA upstream 21124 66045863 ~ 66050191 (-) False LOC110524366
TU484971 other downstream 625694 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 996686 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1097286 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1275312 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1302259 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 762312 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1785866 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1786747 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2315465 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2675082 68699821 ~ 68707448 (-) True G432310

Expression Profile