RNA id: TU485545


Basic Information

Item Value
RNA id TU485545
length 1873
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G428610
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66025895 ~ 66036340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatcctcggtatgaccttctttaaaaaATTCTGTAtcgtttagtacaatttcaaacagcaaaatgatcctcggtatgaccttctttaaacaattctgtatagtttagtacaatttcatacagcaaaatgatcctcggtatgaccttctttatacaattctgtatagtttagtacgatttcaaacagcaaaatgatcctcggaatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttactacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgcatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttactacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatcattggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagcacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacatcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacatcaaaatgatccttggtatgaccttccttatacaatgctgtatagtttagtacaatttcaaacagcaaaatgatccttagtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttgtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttaaacaattctgtatagtttagtacaatttcaaacagcaaaatgatccttggtatgaccttctttatacaatgctgtatagtttagtacaatttcaaacagcgaaatgatccttggtatgaccttctttatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485519 lncRNA downstream 1156 66008284 ~ 66024739 (-) True G428588
TU485521 lncRNA downstream 14417 65999866 ~ 66011478 (-) True G428589
TU485377 lncRNA downstream 143893 65880199 ~ 65882002 (-) False G428509
TU485376 lncRNA downstream 143893 65881095 ~ 65882002 (-) False G428509
TU485378 lncRNA downstream 143893 65881095 ~ 65882002 (-) False G428509
TU485551 lncRNA upstream 1852 66038192 ~ 66038559 (-) True G428615
TU485556 lncRNA upstream 3411 66039751 ~ 66039963 (-) True G428620
TU485558 lncRNA upstream 6271 66042611 ~ 66042823 (-) True G428622
TU485586 lncRNA upstream 17695 66054035 ~ 66054742 (-) True G428633
TU486231 lncRNA upstream 70498 66106838 ~ 66108450 (-) True rfx2
XM_036978104.1 mRNA downstream 66635 65864618 ~ 65959260 (-) False trabd2b
XM_021603941.2 mRNA downstream 66636 65864619 ~ 65959259 (-) True trabd2b
XM_021603936.2 mRNA downstream 343923 65678114 ~ 65681972 (-) True fam78bb
XM_021603928.2 mRNA downstream 454722 65551345 ~ 65571173 (-) True LOC110524355
XM_021603929.2 mRNA downstream 454723 65551345 ~ 65571172 (-) False LOC110524355
XM_036978108.1 mRNA upstream 9523 66045863 ~ 66050179 (-) False LOC110524366
XM_036978107.1 mRNA upstream 9523 66045863 ~ 66050182 (-) False LOC110524366
XM_036978105.1 mRNA upstream 9523 66045863 ~ 66050187 (-) False LOC110524366
XM_036978106.1 mRNA upstream 9523 66045863 ~ 66050187 (-) False LOC110524366
XM_021603944.2 mRNA upstream 9523 66045863 ~ 66050191 (-) False LOC110524366
TU484971 other downstream 643305 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1014297 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1114897 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1292923 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1319870 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 750711 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1774265 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1775146 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2303864 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2663481 68699821 ~ 68707448 (-) True G432310

Expression Profile