RNA id: TU485562


Basic Information

Item Value
RNA id TU485562
length 200
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G428626
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66051173 ~ 66051372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttttgtcatgccctcttcacaactgtcttggtgtgtttggaccatgatagatcatgggtgatgtggacaccaaggaacttgaaactctcgaccagctccactacagaagtcgatgttaatgggggcctgtttggcccgccttttcctgtagtccacgatcagctcctttgtcttgctcccattgagggagaggtcgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485561 lncRNA upstream 5972 66044527 ~ 66045201 (+) True G428625
TU485486 lncRNA upstream 17050 65983251 ~ 66034123 (+) False G428576
TU485493 lncRNA upstream 20703 66012566 ~ 66030470 (+) False G428576
TU485479 lncRNA upstream 20703 66023831 ~ 66030470 (+) False G428576
TU485492 lncRNA upstream 20703 66025941 ~ 66030470 (+) True G428576
TU485569 lncRNA downstream 5023 66056395 ~ 66058138 (+) True znf692
TU485594 lncRNA downstream 55761 66107133 ~ 66108885 (+) True G428637
TU485626 lncRNA downstream 58866 66110238 ~ 66110481 (+) True G428669
TU485627 lncRNA downstream 59615 66110987 ~ 66111208 (+) True G428670
TU485628 lncRNA downstream 60316 66111688 ~ 66111982 (+) True G428671
XM_021603939.2 mRNA upstream 335306 65713466 ~ 65715867 (+) True foxd2
XM_021603937.2 mRNA upstream 345744 65703567 ~ 65705429 (+) True foxe3
XM_036978103.1 mRNA upstream 373332 65661962 ~ 65677841 (+) True slc35a3a
XM_036978102.1 mRNA upstream 389724 65604119 ~ 65661449 (+) False notch2
NM_001165250.1 mRNA upstream 460426 65587181 ~ 65590747 (+) True sec22bb
XM_021603948.2 mRNA downstream 2592 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA downstream 2592 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA downstream 2592 66053964 ~ 66058160 (+) False znf692
XM_036978111.1 mRNA downstream 7722 66059094 ~ 66106566 (+) True fcho1
XM_021603954.2 mRNA downstream 132291 66183663 ~ 66210856 (+) False acsbg2
TU484533 other upstream 529793 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 1022471 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 90707 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 930577 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1409357 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1409357 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 2051807 68103179 ~ 68103534 (+) True G430796

Expression Profile