RNA id: TU485594


Basic Information

Item Value
RNA id TU485594
length 1753
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G428637
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66107133 ~ 66108885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCAAGCTCAGGATTCTTATAGCTACTACAAAATCTGAGGGGGAACTCAACCAAAAGTGTTTAGAGAAACGCTCCATGTCGGTTGTAATTTCCGGTTGAGCAGACAAAATACACCGTTTACCGCGAATGCAAAAACATTTCAATCACACCATTACTGATTGACTCCAGCCCTAAATCAGCTATAATTTTTTATAAATAGAAATGGAGATTCTCTCAATATGGAAAAGTGACTGCCGATTTATAGGGCATTTACACCCCAAATATCAACGTTGTTTGTTAACTATTGATGTGTTGACCAGATGACACAAATTATCAAAAGAAGACAAACGTTTGCCTCACATCAGTCCCAGCCACTAAATAATCAAAGCAAGGAGGACATCCCCCTTTAAAAACACAAACAGTGCAGTATGGGGAGAGCTAAATGATTGGGGAAAGACCAAGCGATACAAAAGGCCATTGATGAACACAGATTTTTTACATCATATTAAGAAAGTTATATTTTAAAGTTTAACAGTTTGTTGGTTTTGCACAAATCAGCCCTCCTACAGTATCATTGTACGGCTATATAATAAAATCTTAGAGCAACAGACTCAAAAGCTATTAGCATTTTCATATCAAGCAATATGAATGAATAAACATGGATTGGGAGATTCTGAATATTTCCTTCCAATCAATATAGAATGAGTCCATTTGAGTAACGGTAAGGGGAGAGCCTATCTGAACTCAAACAGCATCAGTTGAACTGAACAGATGCAACTACAGTTTCCTTTTAAGGGTTTTGGCTTCGGGGGTCCAATGCTCTTTCACGTTTTGTTAAATACATACTATTTTACATCCCTTAAGAAATTTGACTTGACCCAGACATACAGCTCCACAAAATGGATGCCAGACACCTCCAGTTAACCAAGAAGGTAGATCATATATATGTACAATCTGGTGGTTTCCTGAACACATTCCACCACACTCCTTTCAGTCTTTAAAACATATCTAAATGTCTCATCAACATAAGAGGCAACTGGCTTGTCCTAGACTCTGGGGCGTGACATCTAGAAACACCCTGAAGTTCTACAGTCATGGATCAATGAGACTTGTGTGCATCCTGAAATTGAGTTTCTGCCAAACGGCATCATAGAATCGTTATCATTTGAATGAAAAGTGATATATACATGGAAAAGGTTACTTGAGTAAGGGGGAGTTGGTAGAATTAACAGTAAGTGGCTCTTTTATAGTTGCCTCataagaacagaacagagcatagAAAAGGATGAGGTAACTAATCATCTCATATGGCCAGAGTGTTAAGAGGTCCCTGCCTTCCAATCAACTATGAGACTAGGGGCCTACTGACATTCCCACCAGCGTGGCCACTCTTGGGTGAGGGACAAGTCCTTTGCGTCAGTGGGTTGCATCAATGTGGGTTGAGCTGCCAGTAGCAACAGAGGCAACATGTATAGTATACTCCTACAGGTTTAAAGGTGCTTTAGAATGTCTGAGGTTCTGAAACAATACATTCATACTGCGGTAGAGGCACAGCTGAGGGAGGAGATAGACATCTGTAGTAGTGGCGGTTAAAGAGTTATCTAAGGCACTGGAATTACACAGCTAATAAAGGATAAGATACACACAGCACTCATTCAAAGTTACACGTATCCAACATCGGTACTGCACAAAGTCATCCTGAATCACAGTTGCAAAACGGGAACAAGTGAACGGAGAGAAATTAGAACTGTATACCCCTGTCAGGTCAAACCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485569 lncRNA upstream 48995 66056395 ~ 66058138 (+) True znf692
TU485562 lncRNA upstream 55761 66051173 ~ 66051372 (+) True G428626
TU485561 lncRNA upstream 61932 66044527 ~ 66045201 (+) True G428625
TU485479 lncRNA upstream 76663 66023831 ~ 66030470 (+) False G428576
TU485626 lncRNA downstream 1353 66110238 ~ 66110481 (+) True G428669
TU485627 lncRNA downstream 2102 66110987 ~ 66111208 (+) True G428670
TU485628 lncRNA downstream 2803 66111688 ~ 66111982 (+) True G428671
TU485630 lncRNA downstream 4939 66113824 ~ 66114409 (+) True G428673
TU485632 lncRNA downstream 7208 66116093 ~ 66116308 (+) True G428675
XM_036978111.1 mRNA upstream 567 66059094 ~ 66106566 (+) True fcho1
XM_021603948.2 mRNA upstream 48973 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA upstream 48973 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA upstream 48973 66053964 ~ 66058160 (+) False znf692
XM_021603939.2 mRNA upstream 391266 65713466 ~ 65715867 (+) True foxd2
XM_021603954.2 mRNA downstream 74778 66183663 ~ 66210856 (+) False acsbg2
XM_021603953.2 mRNA downstream 83808 66192693 ~ 66210856 (+) True acsbg2
XR_005051834.1 mRNA downstream 131655 66240540 ~ 66248348 (+) True LOC118964639
XM_021603962.2 mRNA downstream 231696 66340581 ~ 66349235 (+) False LOC110524376
XM_021603963.2 mRNA downstream 231696 66340581 ~ 66349235 (+) True LOC110524376
TU484533 other upstream 585753 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 1078431 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 33194 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 873064 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1351844 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1351844 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1994294 68103179 ~ 68103534 (+) True G430796

Expression Profile