RNA id: TU485628


Basic Information

Item Value
RNA id TU485628
length 295
lncRNA type intronic
GC content 0.52
exon number 1
gene id G428671
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66111688 ~ 66111982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcttggccaacaacctccttccctcagtaagagcattgaagatgggtcgtggttgggtcttccagcataacaacgacccaaaacacacagccagggcaactaaggagtggctccgtaagaagcatctcaaggtcctggagtggcctagctagtctccagacctgaacccaatagaaaatctttggagggagctgaaagttcgtattgcccagcgacagccccgaaacctgaaggatctagagaaggtctgtatggaggagtgggccaaaatccctgctgcagtgtgtgcaaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485627 lncRNA upstream 480 66110987 ~ 66111208 (+) True G428670
TU485626 lncRNA upstream 1207 66110238 ~ 66110481 (+) True G428669
TU485594 lncRNA upstream 2803 66107133 ~ 66108885 (+) True G428637
TU485569 lncRNA upstream 53550 66056395 ~ 66058138 (+) True znf692
TU485562 lncRNA upstream 60316 66051173 ~ 66051372 (+) True G428626
TU485630 lncRNA downstream 1842 66113824 ~ 66114409 (+) True G428673
TU485632 lncRNA downstream 4111 66116093 ~ 66116308 (+) True G428675
TU485634 lncRNA downstream 6493 66118475 ~ 66120162 (+) True G428676
TU485640 lncRNA downstream 12395 66124377 ~ 66124658 (+) True G428682
TU485641 lncRNA downstream 13366 66125348 ~ 66125600 (+) True G428683
XM_036978111.1 mRNA upstream 5122 66059094 ~ 66106566 (+) True fcho1
XM_021603948.2 mRNA upstream 53528 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA upstream 53528 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA upstream 53528 66053964 ~ 66058160 (+) False znf692
XM_021603939.2 mRNA upstream 395821 65713466 ~ 65715867 (+) True foxd2
XM_021603954.2 mRNA downstream 71681 66183663 ~ 66210856 (+) False acsbg2
XM_021603953.2 mRNA downstream 80711 66192693 ~ 66210856 (+) True acsbg2
XR_005051834.1 mRNA downstream 128558 66240540 ~ 66248348 (+) True LOC118964639
XM_021603962.2 mRNA downstream 228599 66340581 ~ 66349235 (+) False LOC110524376
XM_021603963.2 mRNA downstream 228599 66340581 ~ 66349235 (+) True LOC110524376
TU484533 other upstream 590308 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 1082986 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 30097 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 869967 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1348747 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1348747 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1991197 68103179 ~ 68103534 (+) True G430796

Expression Profile