RNA id: TU485632


Basic Information

Item Value
RNA id TU485632
length 216
lncRNA type intronic
GC content 0.44
exon number 1
gene id G428675
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66116093 ~ 66116308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATATAACGTTACACAACTAGACCAAAAACAACGGCCACAGAAAGCCTACGGTAGGTTTTAATAGCACATAATATAGACAGCAGTGAGTATGTTTTGTCTATCAGTGCTCTGTGGTACAGTGTCTCTCTTCACTATGATTCACACCATGCCCAGAGATTCTCCTTTGGCAGGACATGCTCCCGGTCTCCAGTTACAGCCCAGCACAGTATAGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485630 lncRNA upstream 1684 66113824 ~ 66114409 (+) True G428673
TU485628 lncRNA upstream 4111 66111688 ~ 66111982 (+) True G428671
TU485627 lncRNA upstream 4885 66110987 ~ 66111208 (+) True G428670
TU485626 lncRNA upstream 5612 66110238 ~ 66110481 (+) True G428669
TU485594 lncRNA upstream 7208 66107133 ~ 66108885 (+) True G428637
TU485634 lncRNA downstream 2167 66118475 ~ 66120162 (+) True G428676
TU485640 lncRNA downstream 8069 66124377 ~ 66124658 (+) True G428682
TU485641 lncRNA downstream 9040 66125348 ~ 66125600 (+) True G428683
TU485644 lncRNA downstream 12348 66128656 ~ 66129472 (+) True G428686
TU485646 lncRNA downstream 15498 66131806 ~ 66132067 (+) True G428688
XM_036978111.1 mRNA upstream 9527 66059094 ~ 66106566 (+) True fcho1
XM_021603948.2 mRNA upstream 57933 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA upstream 57933 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA upstream 57933 66053964 ~ 66058160 (+) False znf692
XM_021603939.2 mRNA upstream 400226 65713466 ~ 65715867 (+) True foxd2
XM_021603954.2 mRNA downstream 67355 66183663 ~ 66210856 (+) False acsbg2
XM_021603953.2 mRNA downstream 76385 66192693 ~ 66210856 (+) True acsbg2
XR_005051834.1 mRNA downstream 124232 66240540 ~ 66248348 (+) True LOC118964639
XM_021603962.2 mRNA downstream 224273 66340581 ~ 66349235 (+) False LOC110524376
XM_021603963.2 mRNA downstream 224273 66340581 ~ 66349235 (+) True LOC110524376
TU484533 other upstream 594713 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 1087391 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 25771 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 865641 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1344421 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1344421 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1986871 68103179 ~ 68103534 (+) True G430796

Expression Profile