RNA id: TU486239


Basic Information

Item Value
RNA id TU486239
length 551
lncRNA type intronic
GC content 0.46
exon number 1
gene id G429244
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66123061 ~ 66123611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcgcaaaggtctgtctttgtcctgtcgtgtcccttatatatctatttatatatttttcttcgcatatctttttcaaatattttcctaaacctcaacttctcaatactctcctgcaacctgcctcacccaatgtggcgtgaatctgtttttttcctaaagtatttctatttacttcggatcttgaatccctcaactgaagctagccagctaactacctaccagctatcagtcagcaaaccactgctagcggtcatcagctaacctttagctcggaaagctctcgccggTTCGTACAacgtgactcaaaccagagcataacggacctatttttttttctctctccatatccctgGATTCCTACTGCAAACTCTGAACAgtttcatctggatcttcgcaACTAGCTAACCACAATCCCGGGTGACTACTcatggctagcgtttccatcctggagcaagcaccaattagcctgaagcTAGGGCTCCTGGGCTACCACCGAAACCCACttctgggctacaatatccggaccccttttactgccggTACAGGACACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486231 lncRNA downstream 14611 66106838 ~ 66108450 (-) True rfx2
TU485586 lncRNA downstream 68319 66054035 ~ 66054742 (-) True G428633
TU485558 lncRNA downstream 80238 66042611 ~ 66042823 (-) True G428622
TU485556 lncRNA downstream 83098 66039751 ~ 66039963 (-) True G428620
TU485551 lncRNA downstream 84502 66038192 ~ 66038559 (-) True G428615
TU486242 lncRNA upstream 12537 66136148 ~ 66136396 (-) True G429247
TU486235 lncRNA upstream 39834 66163445 ~ 66163684 (-) True G429240
TU486251 lncRNA upstream 53188 66176799 ~ 66177054 (-) True G429255
TU486271 lncRNA upstream 85367 66208978 ~ 66210854 (-) True G429274
TU486348 lncRNA upstream 233922 66357533 ~ 66357785 (-) True G429342
XM_021603943.2 mRNA downstream 72863 66045863 ~ 66050198 (-) True LOC110524366
XM_021603944.2 mRNA downstream 72870 66045863 ~ 66050191 (-) False LOC110524366
XM_036978105.1 mRNA downstream 72874 66045863 ~ 66050187 (-) False LOC110524366
XM_036978106.1 mRNA downstream 72874 66045863 ~ 66050187 (-) False LOC110524366
XM_036978107.1 mRNA downstream 72879 66045863 ~ 66050182 (-) False LOC110524366
XM_021603955.2 mRNA upstream 89886 66213497 ~ 66241138 (-) False mllt1a
XM_021603956.2 mRNA upstream 89886 66213497 ~ 66241138 (-) True mllt1a
XM_021603957.2 mRNA upstream 120769 66244380 ~ 66249228 (-) True acer1
XM_036978118.1 mRNA upstream 130099 66253710 ~ 66275790 (-) False myo1f
XM_036978117.1 mRNA upstream 130099 66253710 ~ 66276000 (-) False myo1f
TU484971 other downstream 740471 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1111463 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1212063 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1390089 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1417036 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 663440 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1686994 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1687875 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2216593 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2576210 68699821 ~ 68707448 (-) True G432310

Expression Profile