RNA id: TU485644



Basic Information


Item Value
RNA id TU485644
length 817
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G428686
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66128656 ~ 66129472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTGTGCCGAGGCGGCGGGTCCTGAGGCCCATGAAGACGGAGCGGATGAGTTTCCCAAAGGAGGCAGCGTTGACCGGGTCCAGTTTCTGCTCCTGACAGTGGCGCAGGTAGTGGTTGTAGAGGGAGCTCCGGGGCAGGCTCACCCCCTCTGCTGTCTCATAGTTATCCAGCAGCCACTGCAgctaaaacacacacagcacagaaacagtcagtcagtcacacctaCTGGGCCCTGTCTGCTGCACTCTGATCCTTACTGTACAACTCCATCCTAAGGTTGAAAGGCTAGAACCCGGTTACTGAGATTTACCACCCAAAACCACTCCTTCCTccccccaggtacacacacacacactggtgcatgcacacacaggtaCACGCCAACCACCTGAGAATTTAGAGGATGTGTTAAAACTGTCAAAGGGAGTGAATTGGTATatttgaggtacacacacacaaacaaaccaccTGTTTAGTGAGTTTAAAGGAGAGAATTTAGATTGAGTTAAAACTGTCAAAGGGAGTGAATTGGTATATTTGAGGTATAGCAGGTACACACAGTTACACGATAGCACGCACACaatagtgtaacagtataactttagaccgtcccctcgcccatacccgggcgcaaaccagggaccctctgcacacaactgacacccacgaagcatcgttacccatcgctccacaaaagccgcggcccttgcagagcaagggtaacaactacttcaaggtctgagcaagtgacgtcaccaattgaaacgctatttagcgcgcaccaccgctaactaagctagcagtttcacatctgtta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU485641 lncRNA upstream 3056 66125348 ~ 66125600 (+) True G428683
TU485640 lncRNA upstream 3998 66124377 ~ 66124658 (+) True G428682
TU485634 lncRNA upstream 8494 66118475 ~ 66120162 (+) True G428676
TU485632 lncRNA upstream 12348 66116093 ~ 66116308 (+) True G428675
TU485630 lncRNA upstream 14247 66113824 ~ 66114409 (+) True G428673
TU485646 lncRNA downstream 2334 66131806 ~ 66132067 (+) True G428688
TU485647 lncRNA downstream 2968 66132440 ~ 66132655 (+) True G428689
TU485648 lncRNA downstream 4584 66134056 ~ 66134278 (+) True G428690
TU485651 lncRNA downstream 9353 66138825 ~ 66139279 (+) True G428693
TU485653 lncRNA downstream 12162 66141634 ~ 66141927 (+) True G428695
XM_036978111.1 mRNA upstream 22090 66059094 ~ 66106566 (+) True fcho1
XM_021603948.2 mRNA upstream 70496 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA upstream 70496 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA upstream 70496 66053964 ~ 66058160 (+) False znf692
XM_021603939.2 mRNA upstream 412789 65713466 ~ 65715867 (+) True foxd2
XM_021603954.2 mRNA downstream 54191 66183663 ~ 66210856 (+) False acsbg2
XM_021603953.2 mRNA downstream 63221 66192693 ~ 66210856 (+) True acsbg2
XR_005051834.1 mRNA downstream 111068 66240540 ~ 66248348 (+) True LOC118964639
XM_021603962.2 mRNA downstream 211109 66340581 ~ 66349235 (+) False LOC110524376
XM_021603963.2 mRNA downstream 211109 66340581 ~ 66349235 (+) True LOC110524376
TU484533 other upstream 607276 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 1099954 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 12607 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 852477 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1331257 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1331257 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1973707 68103179 ~ 68103534 (+) True G430796

Expression Profile