RNA id: TU485646


Basic Information

Item Value
RNA id TU485646
length 262
lncRNA type antisense_over
GC content 0.65
exon number 1
gene id G428688
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66131806 ~ 66132067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGAGGAGGAGCGGGAGGAGTGTGAGGCGTGGTGGCGGCCTCCCTCCATGCCCCCGCCGTGGATCAGGTAGGTGCTGCCACCTGAGATGATCTGACTGCCACCCACATCCATGGTGATGCCCACCATGCCGTGGGGCGGCACACCACTGGCGGAGGAGACCACCGTTGTGACCTGGGAACCCCCGCCCTGAGAGTCAAAATAGGCTCCTCCACTGCCCTGGCCATACAGCTGGGCCTCAGGGTTATAGGAGTAGGCTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485644 lncRNA upstream 2334 66128656 ~ 66129472 (+) True G428686
TU485641 lncRNA upstream 6206 66125348 ~ 66125600 (+) True G428683
TU485640 lncRNA upstream 7148 66124377 ~ 66124658 (+) True G428682
TU485634 lncRNA upstream 11644 66118475 ~ 66120162 (+) True G428676
TU485632 lncRNA upstream 15498 66116093 ~ 66116308 (+) True G428675
TU485647 lncRNA downstream 373 66132440 ~ 66132655 (+) True G428689
TU485648 lncRNA downstream 1989 66134056 ~ 66134278 (+) True G428690
TU485651 lncRNA downstream 6758 66138825 ~ 66139279 (+) True G428693
TU485653 lncRNA downstream 9567 66141634 ~ 66141927 (+) True G428695
TU485658 lncRNA downstream 17992 66150059 ~ 66150289 (+) True G428700
XM_036978111.1 mRNA upstream 25240 66059094 ~ 66106566 (+) True fcho1
XM_021603948.2 mRNA upstream 73646 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA upstream 73646 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA upstream 73646 66053964 ~ 66058160 (+) False znf692
XM_021603939.2 mRNA upstream 415939 65713466 ~ 65715867 (+) True foxd2
XM_021603954.2 mRNA downstream 51596 66183663 ~ 66210856 (+) False acsbg2
XM_021603953.2 mRNA downstream 60626 66192693 ~ 66210856 (+) True acsbg2
XR_005051834.1 mRNA downstream 108473 66240540 ~ 66248348 (+) True LOC118964639
XM_021603962.2 mRNA downstream 208514 66340581 ~ 66349235 (+) False LOC110524376
XM_021603963.2 mRNA downstream 208514 66340581 ~ 66349235 (+) True LOC110524376
TU484533 other upstream 610426 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 1103104 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 10012 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 849882 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1328662 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1328662 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1971112 68103179 ~ 68103534 (+) True G430796

Expression Profile