RNA id: TU485653


Basic Information

Item Value
RNA id TU485653
length 294
lncRNA type intronic
GC content 0.45
exon number 1
gene id G428695
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66141634 ~ 66141927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttccataaggtgtatttttatctgctcGCATCAGTTACcggatgtggaatagagttccatgtagccatggctctatgtagtactgcgcacctcccatagtctgtctattctggactgtgaagagacctctggtggcatgtcttgtggagtatgcatgggtgtccgagctgtgtgctagtagtttgaACAGACACCtcagtgcattcagcatgtcaacactttaCAAAAATAAGTAGATGAAGTCACTCTCCTCCACTTCGAGCcaggagagatttacatgcatattattaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485651 lncRNA upstream 2355 66138825 ~ 66139279 (+) True G428693
TU485648 lncRNA upstream 7356 66134056 ~ 66134278 (+) True G428690
TU485647 lncRNA upstream 8979 66132440 ~ 66132655 (+) True G428689
TU485646 lncRNA upstream 9567 66131806 ~ 66132067 (+) True G428688
TU485644 lncRNA upstream 12162 66128656 ~ 66129472 (+) True G428686
TU485658 lncRNA downstream 8132 66150059 ~ 66150289 (+) True G428700
TU485659 lncRNA downstream 8718 66150645 ~ 66150849 (+) True G428701
TU485668 lncRNA downstream 16272 66158199 ~ 66158524 (+) True G428710
TU485675 lncRNA downstream 24698 66166625 ~ 66166889 (+) True G428717
TU485678 lncRNA downstream 29060 66170987 ~ 66171213 (+) True G428720
XM_036978111.1 mRNA upstream 35068 66059094 ~ 66106566 (+) True fcho1
XM_021603948.2 mRNA upstream 83474 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA upstream 83474 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA upstream 83474 66053964 ~ 66058160 (+) False znf692
XM_021603939.2 mRNA upstream 425767 65713466 ~ 65715867 (+) True foxd2
XM_021603954.2 mRNA downstream 41736 66183663 ~ 66210856 (+) False acsbg2
XM_021603953.2 mRNA downstream 50766 66192693 ~ 66210856 (+) True acsbg2
XR_005051834.1 mRNA downstream 98613 66240540 ~ 66248348 (+) True LOC118964639
XM_021603962.2 mRNA downstream 198654 66340581 ~ 66349235 (+) False LOC110524376
XM_021603963.2 mRNA downstream 198654 66340581 ~ 66349235 (+) True LOC110524376
TU484533 other upstream 620254 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 1112932 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 152 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 840022 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1318802 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1318802 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1961252 68103179 ~ 68103534 (+) True G430796

Expression Profile