RNA id: TU485675


Basic Information

Item Value
RNA id TU485675
length 265
lncRNA type intronic
GC content 0.39
exon number 1
gene id G428717
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66166625 ~ 66166889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acataatatgtacataaacttCGCTATTTGCATTAGCAATGGAATGTCACATGCCGAGAGAGGGTTCGGGGGCTTGTCAATGTACTAGCTCCAAAGCACAAATGTACCTTAAATATCACAGTAGCCTCTAGACAGTAAACATGCAACCTATTCAACTATGCGAGTAAATGTTCCATCTACCATCCATATTACACTCTTGATATAACAAAACCCTTTTACTCTTgaacaaggcaacagtaaacatgtcatcCCCCAGAAATGATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485668 lncRNA upstream 8101 66158199 ~ 66158524 (+) True G428710
TU485659 lncRNA upstream 15776 66150645 ~ 66150849 (+) True G428701
TU485658 lncRNA upstream 16336 66150059 ~ 66150289 (+) True G428700
TU485653 lncRNA upstream 24698 66141634 ~ 66141927 (+) True G428695
TU485651 lncRNA upstream 27346 66138825 ~ 66139279 (+) True G428693
TU485678 lncRNA downstream 4098 66170987 ~ 66171213 (+) True G428720
TU485723 lncRNA downstream 101661 66268550 ~ 66295412 (+) True G428763
TU485765 lncRNA downstream 140681 66307570 ~ 66308699 (+) False G428804
TU485766 lncRNA downstream 140681 66307570 ~ 66309460 (+) True G428804
TU485767 lncRNA downstream 143928 66310817 ~ 66311746 (+) True G428805
XM_036978111.1 mRNA upstream 60059 66059094 ~ 66106566 (+) True fcho1
XM_021603948.2 mRNA upstream 108465 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA upstream 108465 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA upstream 108465 66053964 ~ 66058160 (+) False znf692
XM_021603939.2 mRNA upstream 450758 65713466 ~ 65715867 (+) True foxd2
XM_021603954.2 mRNA downstream 16774 66183663 ~ 66210856 (+) False acsbg2
XM_021603953.2 mRNA downstream 25804 66192693 ~ 66210856 (+) True acsbg2
XR_005051834.1 mRNA downstream 73651 66240540 ~ 66248348 (+) True LOC118964639
XM_021603962.2 mRNA downstream 173692 66340581 ~ 66349235 (+) False LOC110524376
XM_021603963.2 mRNA downstream 173692 66340581 ~ 66349235 (+) True LOC110524376
TU485654 other upstream 24020 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 645245 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1137923 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 815060 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1293840 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1293840 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1936290 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 2045827 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile