RNA id: TU485892


Basic Information

Item Value
RNA id TU485892
length 340
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G428918
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66506279 ~ 66506618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACAGCACCTCATGGGACAATTCATTGTTTTTACAAATTGTCAAGCTTTTATGCTTTCGGCTCAGGCCCTGCATAGCTATTTGGATCTCTCCCCTCAGCTTTTGTACCACCCTTTCCACCTCCACCGTTTACAGATCATCACTTCAAGACTGTAGGTTGTGTAACTTTTTCACTCTTTGAAGTGATTTATGTCAGTTCCTTCAGAAGACAATGTAGATATAACTCCCTCTCAAAAGCTATCCTGGTGTTCCAGTCCAATCCTGAACACTTTCACTCTACTGACaaaagctaggtttccatccaattggtgacagattttcatgcaaatatgaTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485886 lncRNA upstream 7681 66498360 ~ 66498598 (+) True G428912
TU485807 lncRNA upstream 142466 66363553 ~ 66363813 (+) True G428841
TU485784 lncRNA upstream 174819 66330913 ~ 66331460 (+) True G428822
TU485767 lncRNA upstream 194533 66310817 ~ 66311746 (+) True G428805
TU485766 lncRNA upstream 196819 66307570 ~ 66309460 (+) True G428804
TU485896 lncRNA downstream 3284 66509902 ~ 66510264 (+) True G428922
TU485826 lncRNA downstream 150117 66656735 ~ 66658029 (+) True G428857
TU485975 lncRNA downstream 164627 66671245 ~ 66697999 (+) True G428992
TU485984 lncRNA downstream 200929 66707547 ~ 66707778 (+) True G429001
TU486016 lncRNA downstream 246617 66753235 ~ 66753453 (+) True G429028
XM_021603974.2 mRNA upstream 16206 66482562 ~ 66490073 (+) True LOC110524383
XM_021603971.2 mRNA upstream 25693 66434671 ~ 66480586 (+) False csnk1g2b
XM_036978126.1 mRNA downstream 13219 66519837 ~ 66634272 (+) False LOC110524384
XM_036978124.1 mRNA downstream 15180 66521798 ~ 66634272 (+) False LOC110524384
XM_036978125.1 mRNA downstream 15180 66521798 ~ 66634272 (+) False LOC110524384
XM_036978127.1 mRNA downstream 15180 66521798 ~ 66634272 (+) False LOC110524384
XM_036978128.1 mRNA downstream 15180 66521798 ~ 66634272 (+) False LOC110524384
TU485654 other upstream 363674 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 984899 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1477577 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 475331 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 954111 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 954111 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1596561 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1706098 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile