RNA id: TU485896


Basic Information

Item Value
RNA id TU485896
length 363
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G428922
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66509902 ~ 66510264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaaggcattgatgctatggactggcccgtccgttccccagacctgaatccaattgaacacatctgggacatcatgtctcgctccatccaccacagactggcCGGcagctttagtccaggtctgggaggagatccctcaggagaccatccgccacctcatcaggagcatgcccaggcgttgtagataggtcatacaggcacgtggaggccacacacactactgagcctaattttgacttgttttaaggacattacatcaaacttggatcagcctgtagtgtggttttccactttaattttgagtgtgactccaaatccagacctccatgggttgataaatttgatttccattgacaatttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485892 lncRNA upstream 3284 66506279 ~ 66506618 (+) True G428918
TU485886 lncRNA upstream 11304 66498360 ~ 66498598 (+) True G428912
TU485807 lncRNA upstream 146089 66363553 ~ 66363813 (+) True G428841
TU485784 lncRNA upstream 178442 66330913 ~ 66331460 (+) True G428822
TU485767 lncRNA upstream 198156 66310817 ~ 66311746 (+) True G428805
TU485826 lncRNA downstream 146471 66656735 ~ 66658029 (+) True G428857
TU485975 lncRNA downstream 160981 66671245 ~ 66697999 (+) True G428992
TU485984 lncRNA downstream 197283 66707547 ~ 66707778 (+) True G429001
TU486016 lncRNA downstream 242971 66753235 ~ 66753453 (+) True G429028
TU485818 lncRNA downstream 274673 66784937 ~ 66785516 (+) True LOC110524392
XM_021603974.2 mRNA upstream 19829 66482562 ~ 66490073 (+) True LOC110524383
XM_021603971.2 mRNA upstream 29316 66434671 ~ 66480586 (+) False csnk1g2b
XM_036978126.1 mRNA downstream 9573 66519837 ~ 66634272 (+) False LOC110524384
XM_036978124.1 mRNA downstream 11534 66521798 ~ 66634272 (+) False LOC110524384
XM_036978125.1 mRNA downstream 11534 66521798 ~ 66634272 (+) False LOC110524384
XM_036978127.1 mRNA downstream 11534 66521798 ~ 66634272 (+) False LOC110524384
XM_036978128.1 mRNA downstream 11534 66521798 ~ 66634272 (+) False LOC110524384
TU485654 other upstream 367297 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 988522 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1481200 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 471685 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 950465 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 950465 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1592915 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1702452 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile